Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K07
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420...    28   2.9  
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    27   6.8  

>04_04_1076 -
           30639835-30640898,30641613-30641915,30642008-30642068,
           30643076-30644380
          Length = 910

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 367 GSARTDKHRQR*APATAPRSQQSAMLLELV 278
           GS RT    +R APAT PR ++    L LV
Sbjct: 653 GSGRTANKHERPAPATRPRQRRKRKYLYLV 682


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 314 EVSTVGYAAGAGFSQVRNNELGQVSGV 234
           EV++ GY+AG+G  + R + +G +S V
Sbjct: 278 EVASGGYSAGSGGHRSRRSSIGSLSSV 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,589
Number of Sequences: 37544
Number of extensions: 159235
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)