Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K07
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42531| Best HMM Match : DoxX (HMM E-Value=2)                        30   0.99 
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 27   7.0  
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_20650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_46626| Best HMM Match : wnt (HMM E-Value=0)                         27   9.2  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_42531| Best HMM Match : DoxX (HMM E-Value=2)
          Length = 210

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 291 CWSWFFSSPE*RARSGVRCSSLVLLVA 211
           CWSW   SP    ++G RC  LVLL+A
Sbjct: 42  CWSWSLDSPGTSYQNG-RCPYLVLLLA 67


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 442 HRGPGSVDDGDALFLIEDLHR*RVSGSARTDKHRQR*APATAPRSQQSAM 293
           + G G  + G  + L  D+    +SGS    KH  +  P TA   +++A+
Sbjct: 86  YHGHGVSEPGSLVALRRDIKTGELSGSIVVQKHLHKLEPVTADLKKRAAL 135


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 66 SHARNARHCHTRRTRPVLP 10
          S A +A  CH+R T+PV P
Sbjct: 31 SQANSAETCHSRTTKPVTP 49


>SB_20650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 66 SHARNARHCHTRRTRPVLP 10
          S A +A  CH+R T+PV P
Sbjct: 31 SQANSAETCHSRTTKPVTP 49


>SB_46626| Best HMM Match : wnt (HMM E-Value=0)
          Length = 359

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 241 QVFEPGVVSCSIALVHKCQVCSVVGRQRAVGRRSQGGS 128
           Q ++ GV  C     +K   CS++G +R  G+R+  G+
Sbjct: 107 QGYDLGVEECKYQFRNKRWNCSLLGEERPFGQRAVPGT 144


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 158 SLTTNHATHLTLVD*RYRATNNTRLEHLT 244
           +L T HATH+TL+     AT+  R EH T
Sbjct: 264 TLLTTHATHITLL--TTHATHVARNEHYT 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,575,354
Number of Sequences: 59808
Number of extensions: 174917
Number of successful extensions: 365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)