Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K07
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    28   3.5  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    28   3.5  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  GAPGESGACGSAGHC 56
           GAPGE+GA GS G C
Sbjct: 282 GAPGEAGAPGSGGGC 296


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  GAPGESGACGSAGHC 56
           GAPGE+GA GS G C
Sbjct: 292 GAPGEAGAPGSGGGC 306


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 12  GAPGESGACGSAGHC 56
           GAPG++GA GS G C
Sbjct: 286 GAPGDAGAPGSGGGC 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,120,919
Number of Sequences: 27780
Number of extensions: 118573
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)