Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K06
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   1.8  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   7.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.6  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   9.6  

>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 493 CEIMLNYFDSHIYSNQVGYTVCD 425
           C+ +LN+ + HI+  + GY  C+
Sbjct: 145 CDKLLNFINGHIHCRKCGYIFCN 167


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 346 LQTVYSGSCYPYDSVRSETIASTGQGYRIRYT 441
           ++T Y GS Y Y+S+ +   ++  QGY +  T
Sbjct: 421 IRTQYEGSGYRYNSLGAWPFSNITQGYTVSDT 452


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 334 GYATLQTVYSGSCYPYDSVRSETIASTGQG 423
           GY T  T+ SGS YP  +   +T++ T  G
Sbjct: 181 GYITT-TLTSGSSYPVSTTTLQTVSGTQSG 209


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 170 HS*HDALSQLKVQHLI-ISILIHQNKRYKIVQLDLIEISKPCL 45
           HS +  L  L+V HL  +   +  ++R      DL E SKPCL
Sbjct: 84  HSTNSQLEPLEVFHLHKLHSAVFTSRRDPSFADDLFESSKPCL 126


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 146 GKARHAKNVFANEEDAKKSKGKVKHDDPDVE 238
           GK  + + VF N+ED       VK D+  VE
Sbjct: 41  GKNDNGEYVFTNKEDINMEDPNVKTDETKVE 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,093
Number of Sequences: 5004
Number of extensions: 52939
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)