Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K06
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1495 + 26983415-26984797                                         30   1.4  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    30   1.9  
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     28   5.7  
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324...    28   5.7  
03_05_0904 + 28658251-28659288                                         28   5.7  
04_01_0271 + 3612066-3614056,3614666-3614780                           28   7.5  
03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732...    27   9.9  

>07_03_1495 + 26983415-26984797
          Length = 460

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 80  VQSYIFYXXXXXXXXXXXXXXTGKARHAKNVFANEEDAKKSKGKVKHDDPDVERVRRAHL 259
           V+S +F+                +A+  K VFA EED +    +V  DD D E  +RA  
Sbjct: 224 VESEVFWARYFYRVHRLKQQEDARAKLVKRVFAAEEDEEDLSWEV--DDEDEEEQQRAEA 281

Query: 260 ND 265
           N+
Sbjct: 282 NE 283


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 185 EDAKKSKGKVKHDDPDVERVRRAHLNDLENIPAFWVLGALYLTTSPE 325
           E  + S G     DPDVE +RR      +++P       LYL+  PE
Sbjct: 478 ERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPE 524


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 331 LGYATLQTVYSGSC-YPYDSVRSETIASTGQ 420
           LG+A   T +SG+C YP+D++R   + ++GQ
Sbjct: 234 LGWAI--TTFSGACAYPFDTLRRRMMLTSGQ 262


>03_06_0192 +
           32230953-32231030,32231130-32231485,32232250-32232425,
           32233857-32234038,32234260-32234443,32235192-32235259,
           32235343-32235495
          Length = 398

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 167 NVFANEEDAKKSKGKVKHDDPDVERVRRAHLNDLENIPAFWVLGA 301
           N+FA  E+ KKS   V  D  DVER++  +    E+  AF  +G+
Sbjct: 209 NLFA--EELKKSNSSVNIDISDVERLKEQYACCAEDQMAFEAIGS 251


>03_05_0904 + 28658251-28659288
          Length = 345

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = -1

Query: 426 IPLAG*GNGFTAYTIVWITRPAVYSLKSSVAQAASGLVVKYRAPRTQNAGMFSKSLRC-A 250
           + + G GNG T Y +      A+Y+LK   +     L        ++ A  F   +RC A
Sbjct: 63  VAVLGRGNGGTVYKVRHRETCALYALKVQHSAGGGELAGVEADILSRTASPF--VVRCHA 120

Query: 249 RLTRSTSGSSCFTLPLDFLASSSLANTFLA*RAFP 145
            L  S S S    L L+ +   SLA+      AFP
Sbjct: 121 VLPASASASGDVALLLELVDGGSLASVAARAGAFP 155


>04_01_0271 + 3612066-3614056,3614666-3614780
          Length = 701

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 355 VYSGSCYPYDSV----RSETIASTGQGYRIRYTLLDYCIYGNQSNST 483
           +Y  +C   D +    R + I+S G+ Y I + +L   I GN +NST
Sbjct: 545 LYQRTCDNLDKICKENRVQLISSGGRAYNIVFMVLMKLIRGNNNNST 591


>03_02_0995 -
           13071930-13072007,13072708-13072999,13073096-13073226,
           13073564-13074466,13074545-13074631,13075141-13075224,
           13075355-13075408,13075903-13076034,13076164-13076259,
           13076508-13076777,13078711-13078800,13079942-13080008,
           13080150-13080241,13080359-13080487
          Length = 834

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = -1

Query: 375 ITRPAVYSLKSSVAQAASGLVVKYRAPRTQNAGMFSKSLRCARLTRSTSGSSCFTLPLDF 196
           I+RPA+    +S  Q++SGL  K   P      + +KS   A + R  + +   +LP   
Sbjct: 158 ISRPALMPSSASSPQSSSGLPSKEVMPIPNKTIIENKSSVYAAVVRDLNDARGRSLPFGP 217

Query: 195 LASSSLANTFLA*RAFPVKSATLN 124
             +   A   L+  A   KS T++
Sbjct: 218 ATAFRAAYESLSVGAIGTKSVTMH 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,670
Number of Sequences: 37544
Number of extensions: 315676
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)