Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K06
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          33   0.20 
SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  29   3.3  
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_4696| Best HMM Match : Calx-beta (HMM E-Value=0.00041)              28   7.7  
SB_2269| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
 Frame = -1

Query: 366 PAVYSLKSSVAQAASGLVVKYRAPRTQNAGMFSKSLRCARLTRSTSGS---SCFTLPLDF 196
           P   SL S    ++S L     +  + +    S SL    LT S+S S   S  +LP DF
Sbjct: 628 PTSSSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSSPSDFLSSSSLPSDF 687

Query: 195 LASSSLANTFLA*RA-FPVKSATLNNFNPNTP 103
           L SSSL + FL+  + F   S++L++F  + P
Sbjct: 688 LTSSSLLSDFLSLPSDFLTSSSSLSDFLTSLP 719



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = -1

Query: 366  PAVYSLKSSVAQAASGLVVKYRAPRTQNAGMFSKSLRCARLTRSTSGS---SCFTLPLDF 196
            P   SL S    ++S L     +  + +    S SL    LT S+S S   S  +LP DF
Sbjct: 1223 PTSSSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSSPSDFLSSSSLPSDF 1282

Query: 195  LASSSLANTFLA*RA-FPVKSATLNNF 118
            L SSSL + FL+  + F   S++L++F
Sbjct: 1283 LTSSSLLSDFLSLPSDFLTSSSSLSDF 1309



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = -1

Query: 354 SLKSSVAQAASGLVVKYRAPRTQNAGMFSKSLRCARLTRSTSGSSCFT---LPLDFLASS 184
           SL S    ++S L V   +  + +  + S S     LT S+S S   T   LP DFL SS
Sbjct: 552 SLLSDFLTSSSSLSVFLTSSSSLSVFLTSSSSLSDFLTSSSSLSVFLTSSSLPSDFLTSS 611

Query: 183 SLANTFL----A*RAFPVKSATLNNF 118
           SL + FL    +   FP  S+  ++F
Sbjct: 612 SLPSDFLTSSSSLSVFPTSSSLPSDF 637



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 246 LTRSTSGSSCFT-LPLDFLASSSLANTFL 163
           LT S+S S   T LP DFL SSSL + FL
Sbjct: 705 LTSSSSLSDFLTSLPSDFLTSSSLPSDFL 733


>SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 275 IPAFWVLGALYLTTSPEAAWATLLFRLYTAGRVIHTIVYAVK 400
           I  F V  ++Y  TSP  AWA +   +  AG  ++ ++Y ++
Sbjct: 266 ILGFMVAISIYSYTSPIKAWANIAKTIVFAGSSVNPVLYCLR 307


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 460 IYSNQVGYTVCDTPGRLRQWFHCVHYRMDN 371
           I+   +G T C    R+  W+H  +YR  N
Sbjct: 789 IHQGHLGITKCQARARMSVWYHLGYYRSGN 818


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 325 GRLGYATLQTVYSGSCYPYDSVRSETIASTGQGYRIRYTLLDYCIYG 465
           G+L  A   + YS SC   DS     + +   G+   + + DYC+ G
Sbjct: 315 GQLYAAFRASQYSVSCMATDSDNKRLVTTDSAGFLYVWDVEDYCLEG 361


>SB_4696| Best HMM Match : Calx-beta (HMM E-Value=0.00041)
          Length = 153

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = -1

Query: 348 KSSVAQAASGLVVKYRAPRTQNAGMFSKSLRCARLTR----STSGSSCFTLPLDFLASSS 181
           +S  A  ++ L V+   P T     + K ++ AR       ST+  + F+ P+D+ A S 
Sbjct: 28  RSRRAATSTSLEVQISGPATPIPKQWGKFIKAARTKSKCRLSTNNGTAFS-PVDYTAMSD 86

Query: 180 LANTFLA*RAFPVKSATLN 124
              TFLA     + + T+N
Sbjct: 87  NMVTFLANEQSKLVNITIN 105


>SB_2269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/112 (19%), Positives = 47/112 (41%)
 Frame = -3

Query: 508 IFLQSCEIMLNYFDSHIYSNQVGYTVCDTPGRLRQWFHCVHYRMDNTTRCIQSEE*RSPS 329
           + +++CE   N   + +Y N  G +    P  LR W   +++ ++  T+CI      S  
Sbjct: 76  VTMETCE-WFNSILAWVYLNSKGKSA---PDLLRTWIRNLNHELEKETQCITFRVETSQL 131

Query: 328 GLRASCQIQSTENPKRWNVL*IVEMRSPDALHVRIVMLHFAFGLLGVLFVGK 173
           G   +    S+    +  +L +  +R    + +++    +    L   F+GK
Sbjct: 132 GFCVTTSQPSSNGTSKVAILEVKVVRLTGEVAIQLTRTPYRLE-LNSKFIGK 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,834,631
Number of Sequences: 59808
Number of extensions: 391948
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)