Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K06
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    31   0.67 
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    29   2.1  
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /...    29   2.1  
At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase fa...    28   6.3  
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    27   8.3  
At1g48970.1 68414.m05489 eukaryotic translation initiation facto...    27   8.3  
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /...    27   8.3  

>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 176 ANEEDAKKSKGKVKHDDPDVERVRRAHLNDLENI 277
           AN E AKK+KG+   ++ D +R RR    D E++
Sbjct: 47  ANGESAKKTKGRGFREEKDSDRQRRLSSRDFESL 80


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 161 AKNVFANEEDAKKSKGKVKHDDPDVERVRRAHLNDLENI 277
           +K +FA+E+D     GK+ +DD  ++++    L + E +
Sbjct: 765 SKELFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEV 803


>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P97687
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
           Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 488

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 230 DVERVRRAHLNDLENIPAFWVLGALYLTT 316
           D ER++ A     ENIP  W LGA  L T
Sbjct: 442 DDERIKYASKAGKENIPLDWALGAFILNT 470


>At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P98200, Homo sapiens SP|O43520,
           {Arabidopsis thaliana} SP|P98204; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1174

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 149 KARHAKNVFANEEDAKKSKGKVKHDDPD 232
           K +HA  + ++EE  K  +G +K +DP+
Sbjct: 201 KLKHALEITSDEESIKNFRGMIKCEDPN 228


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
           strong similarity to chromatin remodeling factor CHD3
           (PICKLE) [Arabidopsis thaliana] GI:6478518; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 1202

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 AKNVFANEEDAKKSKGKVKHDDPDVER-VRRAHLNDLE 271
           +K +F+ E D     GK+ +DD  +E+ + R H++ +E
Sbjct: 691 SKELFSEENDEAGRSGKIHYDDAAIEQLLDRNHVDAVE 728


>At1g48970.1 68414.m05489 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           guanine nucleotide exchange factor, eIF-2B, delta
           subunit [Mus musculus] GI:529428; contains Pfam profile
           PF01008: Initiation factor 2 subunit family
          Length = 756

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 178 QRRGRQEVQRQSEA*RSGRGARQASASQR 264
           +RR  QE QR ++A   G G+R+A  S R
Sbjct: 299 ERRAIQEAQRAAKAAAKGEGSRRADESGR 327


>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P49961
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 503

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 230 DVERVRRAHLNDLENIPAFWVLGALYLTTS 319
           D ER++ A     E+IP  W LGA  L T+
Sbjct: 450 DDERIKYASKAGEEDIPLDWALGAFILNTA 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,357
Number of Sequences: 28952
Number of extensions: 263340
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)