Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K05
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    87   3e-18
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   2.9  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   5.1  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   5.1  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   8.9  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.9  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   8.9  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 38/67 (56%), Positives = 47/67 (70%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTYGHFGREGFP 181
           PLSI V  YGTS KT  +L+ I++KNFDLRPG +VK L L+ P Y  T++YGHF  +  P
Sbjct: 314 PLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQTPFYLSTASYGHFTDQSKP 373

Query: 182 WESPKPL 202
           WE PK L
Sbjct: 374 WEQPKEL 380


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 99  LPGRRSKFFFTMERSCCC 46
           LP  R+  FFT+   CCC
Sbjct: 280 LPDERATMFFTIYELCCC 297


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 171 KGSRGRAPSPSL*NDFRPEALCKYYTSIYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVS 350
           K   G+ P+  L  ++  + L  +   +     +Y+V +  +   L + ++SL  +MFVS
Sbjct: 226 KNMCGKNPTSELPTNYSDKTLTLWENELSSMRKVYFVKYKTEYEFLQKRYLSLARIMFVS 285

Query: 351 RE 356
           ++
Sbjct: 286 KK 287


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 336 IHLKRQTPATIWRPSYNDTRSR 271
           +H++ QTP  +WR  Y+   S+
Sbjct: 220 LHVEHQTPENLWRLPYSSFHSK 241


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 35  SHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTY 154
           S +  +  L+ + K  +  P   +    LRA +Y+K+  Y
Sbjct: 18  SKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQY 57


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 623 FRNTYITSLTTFKPLEXYYKNDIKQVRLP 537
           F++ +   L  FKPL+ +YK  +   R P
Sbjct: 254 FKDYFNAGLFVFKPLKAHYKRLMALARFP 282


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 243 YTSIYYKL-LIYYVCHCRKDAKLSRAFVSLDELMFVS 350
           +TS  Y L L+YY+C  R+ +      V++DE   V+
Sbjct: 141 FTSFRYALFLVYYICRSRRLSPTD--LVAIDEYFLVN 175


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 303 KLSRAFVSLDELMFVSREPREWNCGTAVRKPLPQVTVALTGFNIIIIKCSL 455
           K SRAF+    L+FVS         T V     +V     G NI  + C++
Sbjct: 174 KFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTM 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,434
Number of Sequences: 5004
Number of extensions: 53967
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)