Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K05
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0264 + 2030080-2031270                                           67   9e-12
01_03_0090 - 12347165-12348349                                         66   3e-11
01_02_0051 - 10655867-10657057                                         64   9e-11
01_06_0428 + 29291298-29292014,29292094-29292237,29292338-29292721     27   9.2  

>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA---PIYQKTSTYGHFGRE 172
           PLS+ V  YGT     +++L IVK+NFD RPG I+  L+L+      Y KT+ YGHFGR+
Sbjct: 318 PLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRD 377

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 378 DPDFTWEVVKPL 389


>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLR--APIYQKTSTYGHFGRE- 172
           PLS+ V  YGT     +++L IVK+NFD RPG +   L+L+     + KT+ YGHFGRE 
Sbjct: 317 PLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGNRFIKTAAYGHFGRED 376

Query: 173 -GFPWESPKPLIVE 211
             F WE  KPL  E
Sbjct: 377 PDFTWEVVKPLKYE 390


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA---PIYQKTSTYGHFGRE 172
           PLS+ V  YGT     +++L IV +NFD RPG I+  L+L       Y KT+ YGHFGRE
Sbjct: 318 PLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGRE 377

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 378 DPDFTWEVVKPL 389


>01_06_0428 + 29291298-29292014,29292094-29292237,29292338-29292721
          Length = 414

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 135 YIGARRFNSLTILPGRRSKFFFTMERSCCCVLCE 34
           YIG  RF +   LP   + F   +E   CCVL E
Sbjct: 101 YIGVWRFPNTAGLPQCSTAFPHLLELGLCCVLME 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,664
Number of Sequences: 37544
Number of extensions: 324592
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)