Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K05
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   7e-23
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                30   1.8  
SB_57492| Best HMM Match : Skp1_POZ (HMM E-Value=0.094)                27   9.4  
SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  104 bits (249), Expect = 7e-23
 Identities = 45/67 (67%), Positives = 56/67 (83%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTYGHFGREGFP 181
           PLS+TVF YGTS K++ +LL IV+ NFDLRPGKIVKEL+L+ P+YQK+  YGHF + GF 
Sbjct: 340 PLSVTVFSYGTSKKSEDELLKIVRDNFDLRPGKIVKELDLKKPVYQKSCVYGHF-KPGFT 398

Query: 182 WESPKPL 202
           WE+PKPL
Sbjct: 399 WETPKPL 405


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 41/67 (61%), Positives = 53/67 (79%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTYGHFGREGFP 181
           PLSI+VF YG+ + T +QLL ++K NFDLRPG I+++LNL  PIY+ TST+GHF + GFP
Sbjct: 361 PLSISVFSYGSGNYTDKQLLGVIKDNFDLRPGVIIRDLNLLRPIYKATSTFGHF-KPGFP 419

Query: 182 WESPKPL 202
           WE PK L
Sbjct: 420 WEEPKKL 426


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQK 142
           PLSI+VF YGT ++ +++LL ++K NFDLRPG IV+   L   +  K
Sbjct: 271 PLSISVFTYGTGYRPEEELLEVIKHNFDLRPGVIVRYGTLELQVKTK 317


>SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 86  LRPGKIVKELNLRAPIYQKTSTYGHFGR 169
           +RP  I + L LR+P+Y +T+ YGH GR
Sbjct: 1   MRPAAIERRLKLRSPMYSETAAYGHMGR 28


>SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 168

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 35  SHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTYGHFGREGFPWES 190
           +H   Q L+        LR G   KE     P YQ  + YG   R GFP+ S
Sbjct: 9   THPAAQTLVQASGALKCLRVGHWAKECRSAWPGYQSYAGYGFQNRSGFPYSS 60


>SB_57492| Best HMM Match : Skp1_POZ (HMM E-Value=0.094)
          Length = 137

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 396 GVSLPQYHSSIPGVP*TQTLIHLKRQTPATIWRPSY 289
           G++   +  S P VP T    + K+Q PA    PSY
Sbjct: 25  GIAFLGFFVSSPAVPITSKPTNAKKQLPAAAMTPSY 60


>SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 363 PGVP*TQTLIHLKRQTPATIWRPSYNDTRSRLIVY 259
           P    T TL+HL    P  I  PSY  T + L +Y
Sbjct: 32  PSYTYTYTLLHLYLHPPTPIGTPSYTYTYTLLHIY 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,642
Number of Sequences: 59808
Number of extensions: 398024
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)