Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K05
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...    62   2e-10
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...    62   4e-10
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...    57   1e-08
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...    57   1e-08
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...    56   2e-08
At5g64760.1 68418.m08143 26S proteasome regulatory subunit, puta...    31   0.62 
At5g09900.2 68418.m01145 26S proteasome regulatory subunit, puta...    31   0.82 
At5g09900.1 68418.m01144 26S proteasome regulatory subunit, puta...    31   0.82 
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr...    29   2.5  

>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA---PIYQKTSTYGHFGRE 172
           PLS+ V  YGT     +++L IVK+ FD RPG +   L+L+      +QKT+ YGHFGR+
Sbjct: 315 PLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRD 374

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 375 DPDFTWEVVKPL 386


>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA---PIYQKTSTYGHFGRE 172
           PLS+ V  YGT     +++L IVK++FD RPG I   L+L+      + KT+ YGHFGR+
Sbjct: 315 PLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRD 374

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 375 DADFTWEVVKPL 386


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA---PIYQKTSTYGHFGRE 172
           PLS+ V  Y T     +++L IVK++FD RPG +   L+L+      + KT+ YGHFGR+
Sbjct: 315 PLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRD 374

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 375 DPDFTWEVVKPL 386


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRA---PIYQKTSTYGHFGRE 172
           PLS+ V  Y T     +++L IVK++FD RPG +   L+L+      + KT+ YGHFGR+
Sbjct: 315 PLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRD 374

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 375 DPDFTWEVVKPL 386


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
 Frame = +2

Query: 2   PLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAP---IYQKTSTYGHFGRE 172
           PLS+ V  Y T     + +L ++K+ FD RPG +   L+L+      +QKT+ YGHFGR+
Sbjct: 315 PLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRD 374

Query: 173 --GFPWESPKPL 202
              F WE  KPL
Sbjct: 375 DPDFTWEVVKPL 386


>At5g64760.1 68418.m08143 26S proteasome regulatory subunit,
           putative (RPN5)
          Length = 442

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 252 IYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVSREPREW 368
           IYY+L+I Y  H  +  ++ R++ ++ ++  V   P +W
Sbjct: 215 IYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKENPEQW 253


>At5g09900.2 68418.m01145 26S proteasome regulatory subunit,
           putative (RPN5) p55 protein-like
          Length = 442

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 252 IYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVSREPREW 368
           IYY+L+I Y  H  +  ++ R++ ++ ++  V   P +W
Sbjct: 215 IYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKETPEQW 253


>At5g09900.1 68418.m01144 26S proteasome regulatory subunit,
           putative (RPN5) p55 protein-like
          Length = 442

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 252 IYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVSREPREW 368
           IYY+L+I Y  H  +  ++ R++ ++ ++  V   P +W
Sbjct: 215 IYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKETPEQW 253


>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 886

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = -3

Query: 238 LQSASGLKSF--YNEGL-GALPREPFPAK--VSVSTCFLIYRRS*VQFFNNFTRSQVKVL 74
           L++A+ L  F   N  L G +P   F  K   S++T  L Y     +F  NF+ S+V+VL
Sbjct: 152 LENATSLVDFSAVNCNLSGKIPDYLFEGKDFSSLTTLKLSYNSLVCEFPMNFSDSRVQVL 211

Query: 73  LYNGEK 56
           + NG+K
Sbjct: 212 MLNGQK 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,744
Number of Sequences: 28952
Number of extensions: 270060
Number of successful extensions: 604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)