Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K04
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.19 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.7  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.3  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.0  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 145  TTTTTLAWKDSNMVMRLPTVSSTRKVVS*RT*AQRTKLSPSAGSSLTSAPMESPTP*PTP 324
            +T+TT  W D+ M+ +LP   +   +   R+       +  A  S TS+    P P PT 
Sbjct: 855  STSTTAGWNDAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPT- 913

Query: 325  LTRKDSSPAV 354
             +   S+PA+
Sbjct: 914  ASMTASAPAI 923


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +1

Query: 121  MVMRKSSDTTTTTLAWKDSNMVMRLPTVSSTRKVVS*RT*AQRTKLSPSAGSSLTSAPME 300
            + +  SS  T +T +  + N     PTVSST    S  + A    ++    +S+TS  +E
Sbjct: 794  LYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVN---SNSITSLNLE 850

Query: 301  SPTP*PTPLTRKDS--SPAVLTSQSLKS 378
            S +   +     DS  S   LTSQ   S
Sbjct: 851  STSSVTSTAYTTDSVTSTTALTSQGPSS 878


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 241 AQRTKLSPSAGSSLT-SAPMESPTP*PTPLTRKDSSPAV 354
           + R K + S+ S+L  SAP+E+    PTP T+    P V
Sbjct: 605 SSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPSHKPPV 643


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 250 TKLSPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQS 369
           T ++P+   + TS+    P P  T  T   SSP + TS S
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTS 392


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 262 PSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQSLKSP 381
           P+A ++ T++P++ P P   P  R+ ++     S  + SP
Sbjct: 208 PAATAASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSP 247


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 49  SLFSFRPKTVCDEKAI 2
           SL+ F+PK VC EK I
Sbjct: 599 SLYLFQPKIVCSEKYI 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,800
Number of Sequences: 5004
Number of extensions: 33807
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)