Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_K04
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 32 0.33
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 31 0.58
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 29 3.1
02_05_0686 - 30900748-30902167,30903442-30904742 29 3.1
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 28 4.1
01_06_1701 - 39290537-39291077,39292110-39292801 28 4.1
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 27 7.1
12_01_0365 + 2775020-2775259,2775388-2775465,2775576-2775641,277... 27 9.4
06_03_1248 + 28685911-28687719 27 9.4
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 27 9.4
05_05_0379 + 24518724-24518950,24519076-24519343,24519482-245196... 27 9.4
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 259 SPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQSLKS 378
+PS GS S+P SPTP P+PLT ++ A + + KS
Sbjct: 155 TPSQGSLAMSSPSPSPTP-PSPLTPAPATTAPAPTPTAKS 193
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 377 DLSDWEVSTAGLESFLVSGVGHGVGDSIG 291
DLSD + S AG+E F+ HGVG SIG
Sbjct: 831 DLSDLQ-SKAGVEEFVCCATVHGVGPSIG 858
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 264 VSGQFSYVGPDGVTYSVTYTAD 329
+ GQ +VGPDG TY + AD
Sbjct: 96 IEGQGVFVGPDGATYRGAWAAD 117
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 259 SPSAGSSLTSAPMESPTP*PTPLTRKDS-SPAVLTSQSLKSPYRIQ 393
S A ++++S P SP+P P P R S SP++ +SP R Q
Sbjct: 256 STPAITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQ 301
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 259 SPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQ 366
SPS SSLT P SP P TR S A+L S+
Sbjct: 110 SPSPMSSLTPTPPFSPITVPAAATRHCRSAALLLSR 145
>01_06_1701 - 39290537-39291077,39292110-39292801
Length = 410
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 304 PTP*PTPLTRKDSSPAVLTSQSLKSPYR 387
PTP P P +R+ S P T+ +PYR
Sbjct: 85 PTPPPRPHSRRASEPPPATANGGSAPYR 112
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 449 LITTDY--IKVRRMSIFGLDVWIL*GDLSDWEVSTAGLESFLVS 324
LIT+D + +R++ + W L+DWE+ T G +FLVS
Sbjct: 204 LITSDVSNLDLRKVKVEVSKFW----KLTDWEIRTEGRHNFLVS 243
>12_01_0365 +
2775020-2775259,2775388-2775465,2775576-2775641,
2775736-2775834
Length = 160
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 259 SPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTSQSLKSPYRIQ 393
S S SS +SA + +P P P P T + P + ++ K R++
Sbjct: 45 SSSCSSSGSSAGLPAPPPPPPPATAYGTKPLHMLTEEEKEAKRLR 89
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.1 bits (57), Expect = 9.4
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Frame = +1
Query: 133 KSSDTTT----TTLAWKDSNMVMRL-PTVSSTRKVVS*RT*AQRTKLSPSAGSSLT-SAP 294
+SSDTT T + D + L PTVSS+ S + + + LS S S T + P
Sbjct: 27 RSSDTTRRSSFTAASSSDKPVPSFLRPTVSSSLHSSSSSSPSSSSLLSSSPSSKGTGTTP 86
Query: 295 MESPTP*PT-------PLTRKDSSPAVLTSQSL 372
S P+ P+T KD +PAV TS+ +
Sbjct: 87 RRSADKAPSASAASSRPITPKDKAPAVATSRPI 119
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 259 SPSAGSSLTSAPMESPTP*PTPLTRKDS 342
SPSA SSL+S+P +P+P +R S
Sbjct: 613 SPSATSSLSSSPSPAPSPDSATASRSAS 640
>05_05_0379 +
24518724-24518950,24519076-24519343,24519482-24519616,
24519795-24519860,24520073-24520138,24520294-24520350,
24520767-24520919
Length = 323
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 250 TKLSPSAGSSLTSAPMESPTP*PTPLTRKDSSPAVLTS-QSLKSPY 384
T+ SP + ++ +E+P+P PT RK+ +T+ Q L SP+
Sbjct: 185 TRSSPGSPAAAKKPRIEAPSPMPTFKVRKEKLGDRITALQQLVSPF 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,678
Number of Sequences: 37544
Number of extensions: 223778
Number of successful extensions: 917
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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