Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K03
         (592 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_UPI0000DA4256 Cluster: PREDICTED: hypothetical protein;...    32   8.7  
UniRef50_Q6P2A1 Cluster: Zgc:63970; n=2; Danio rerio|Rep: Zgc:63...    32   8.7  

>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 189

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   PSRCG*GCPGLRPRRCPSRCASGSRPRKPPR 98
           P+RC   CP   P RCP+RC +    R P R
Sbjct: 12  PARCPARCPARCPARCPARCPARCPARCPAR 42



 Score = 33.9 bits (74), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   PSRCG*GCPGLRPRRCPSRCASGSRPRKPPR 98
           P+RC   CP   P RCP+RC +    R P R
Sbjct: 16  PARCPARCPARCPARCPARCPARCPARCPAR 46



 Score = 33.9 bits (74), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   PSRCG*GCPGLRPRRCPSRCASGSRPRKPPR 98
           P+RC   CP   P RCP+RC +    R P R
Sbjct: 20  PARCPARCPARCPARCPARCPARCPARCPAR 50



 Score = 32.3 bits (70), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   PSRCG*GCPGLRPRRCPSRCASGSRPRKP 92
           P+RC   CP   P RCP+RC +    R P
Sbjct: 24  PARCPARCPARCPARCPARCPARCPARCP 52


>UniRef50_UPI0000DA4256 Cluster: PREDICTED: hypothetical protein;
           n=3; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 385

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +3

Query: 63  CASGSRPRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYY-------LVTSHRLMYVH*K 221
           C   +R    P  +  LHTY  ++  TAAT H+ L    Y         T H L+ +H  
Sbjct: 307 CCYSTRTAATPHVLLLLHTYCCYSTLTAATPHLLLLLHTYCCYSTLTAATPHLLLLLHTY 366

Query: 222 IRYNFCTAA-TYLYVLFVT 275
             Y+  TAA  +L +LF T
Sbjct: 367 CCYSTLTAAIPHLLLLFHT 385


>UniRef50_Q6P2A1 Cluster: Zgc:63970; n=2; Danio rerio|Rep: Zgc:63970
           - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 853

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 33  GLRPRRCPSRCASGSRPRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYYLVTSHRLMY 209
           G+RP +CP    S SRP+   +   QLH   +   CT   C  +  RRY+L   H+ M+
Sbjct: 797 GVRPCQCPDCGKSFSRPQS-LKAHQQLHVGTKLFPCT--QCGKSFTRRYHLTRHHQKMH 852


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,073,685
Number of Sequences: 1657284
Number of extensions: 9752656
Number of successful extensions: 19177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19147
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)