Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K03
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    28   6.6  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 150 TCHVNL*RRYYLVTSHRLMYVH*K--IRYNFCTAATYLYVLFVTFVTSHV 293
           TCHV    RY +VT H    V     +RY   T   +  V +VT VT HV
Sbjct: 337 TCHVFHVLRYVMVTCHVFQVVRYVMIVRYVTVTCHVFQVVRYVT-VTCHV 385


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 39   RPRRCPSRCASGSRPRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYYLVTSHRL 203
            R R  P+    G RP +PP +++++  Y+  +   AA  H  L  R    T+H L
Sbjct: 1071 RHRGSPASEQHGDRPERPPEELSRM--YLPPHPDGAALMHPFLIHRESPFTAHHL 1123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,662
Number of Sequences: 59808
Number of extensions: 367315
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)