Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_K03
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /...    28   4.1  
At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA synt...    28   4.1  
At5g27970.1 68418.m03369 expressed protein                             27   7.1  
At3g27270.1 68416.m03408 expressed protein                             27   9.4  

>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 414

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 476 TLDNMCSIAWCDNKCMCDVCVCVLFTHIYYLHC-RSLVERRSDVTNVLAHV-LIKC 315
           T D   ++AW  N C  D    +L T + ++   R++V R S V +   H+ L++C
Sbjct: 130 TFDGQGALAWPFNNCTSDSNCKLLPTSLKFVGMNRTVVRRISSVNSKFFHIALVEC 185


>At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA
           synthase 1 (KCS1) nearly identical to GB:AAC99312
           GI:4091810 from [Arabidopsis thaliana]
          Length = 528

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 183 LVTSHRLMYVH*KIRYNFCTAATYLYVLFVTFVTSHVPLQVLL*TFDKY 329
           L+TS +L YV   + +N C   T L+ L +  +T  V +Q+   TFD +
Sbjct: 37  LLTSVKLKYVKLGL-HNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTF 84


>At5g27970.1 68418.m03369 expressed protein
          Length = 1629

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 448  QAIEHILSSVQRCASHSDSLPTGRRRL-*AHCT 543
            + +E ++S++ RCAS + SLP     L  AHC+
Sbjct: 1447 EVLERLVSTLDRCASRTCSLPVETVELMPAHCS 1479


>At3g27270.1 68416.m03408 expressed protein 
          Length = 249

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 207 T*GDVTSQDSNAATSLHDMS--PPYKGYAVCMCVV 109
           T  D   +D+  A SLH     P Y  Y+VC CV+
Sbjct: 151 TLADARGKDAPLAVSLHRFVTVPFYASYSVCRCVL 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,187
Number of Sequences: 28952
Number of extensions: 222099
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)