Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J24
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1360 + 32889597-32890343 30 1.2
08_02_0754 - 20810449-20810517,20810965-20811036,20811145-208112... 28 5.0
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 28 5.0
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 27 6.5
10_07_0098 - 12844631-12845074,12845329-12846570 27 8.7
09_01_0149 + 2240183-2241133 27 8.7
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 27 8.7
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 8.7
05_03_0596 - 16005622-16006122 27 8.7
03_01_0201 - 1592180-1592218,1592517-1592602,1592966-1593064,159... 27 8.7
>04_04_1360 + 32889597-32890343
Length = 248
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 17 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN--TTVWHYHCQSASM 163
G L A+R G H ++ WD+S+V+ S+ + V H+H + A++
Sbjct: 22 GRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATV 72
>08_02_0754 -
20810449-20810517,20810965-20811036,20811145-20811252,
20811326-20811378,20811401-20811514,20812833-20812962
Length = 181
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 245 VVPLLKERRGEWY--WFVHKQLVTRYYMERLSNGFGEIGE-LSGN 370
V+P + E G Y WFV++ L+ + E L+NGF + + ++GN
Sbjct: 135 VLPNILELVGLGYSGWFVYRYLLFKENREELANGFDALKKRITGN 179
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -3
Query: 481 FKFTQILWMIEV-EMIRSNWIWYTVMIHVSKIVAF----VYDVTTKFTDFTKSIRKSFHI 317
+K + I+ M+++ + W+ M ++KIV VY+V T +T F ++ +H+
Sbjct: 68 YKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHL 127
Query: 316 VTC 308
+ C
Sbjct: 128 LVC 130
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/96 (18%), Positives = 37/96 (38%)
Frame = +2
Query: 89 YKWDNSVVIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKER 268
Y W ++++I+ W +H S++ +L L H+ + + L +
Sbjct: 366 YPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAI---N 422
Query: 269 RGEWYWFVHKQLVTRYYMERLSNGFGEIGELSGNVV 376
G W W +Y+ FG+ + +GN +
Sbjct: 423 NGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYI 458
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 134 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 289
W Y H Q+A +Y YY+ H W G ++P G+ +WF
Sbjct: 312 WFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359
>09_01_0149 + 2240183-2241133
Length = 316
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 345 VKSVNLVVTSXTKATILDTCIITVY 419
V VNLV + TK +L C++ VY
Sbjct: 248 VSPVNLVAAAYTKNMVLGLCLLVVY 272
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 317 SNVLQVVCVRTSTIRHVSLLIEELHRLLATCCKSDD--DNNSGHLNCNHVSSRT 162
++V+ +CVR +T+ HV +E L + + T ++ + D ++ LN + S++
Sbjct: 716 ASVIPELCVRINTLYHVQTELESLEKKIKTYFRNVESIDRSTDELNIHFKLSQS 769
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 131 VWH---YHCQSASMSYYLHDYSLNAHYYYHHLTYNK 229
VWH + C + + Y +++S++ ++ YH Y +
Sbjct: 577 VWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKE 612
>05_03_0596 - 16005622-16006122
Length = 166
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 196 PLLLSSSDLQQVARRRCSSSIKRETWRMVLVR 291
P LS+ DL+++ R R + + T RM+LVR
Sbjct: 9 PTGLSTLDLKEIKRARWTGMLAITTLRMILVR 40
>03_01_0201 -
1592180-1592218,1592517-1592602,1592966-1593064,
1593131-1593232,1593398-1593525,1593602-1593693,
1593798-1593869,1593964-1594032,1594116-1594199,
1594292-1594407,1594752-1594875,1594947-1595053,
1595725-1595875
Length = 422
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 160 RSALAMVVPNSSIRPNNNTIIPFVSGRIVL 71
RSA+ +V P++ + P+++ I+ SGR+ L
Sbjct: 87 RSAIPLVKPHNFMHPDDHLILEDESGRVTL 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,603,839
Number of Sequences: 37544
Number of extensions: 266020
Number of successful extensions: 736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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