Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J24
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28068| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       29   1.7  
SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)           29   2.9  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         27   6.7  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_28068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 173 LHDYSLNAHYYYHHLTYNKWL------GGDVVPLLKERRGEWYWFVHKQLVTRYYMERL 331
           L  Y L  H  Y+  + N+         G ++P+ ++    W WF HK+  TR Y++ L
Sbjct: 11  LKKYELTIHEIYNDASSNRQSCSKTKSNGKILPVKRKWTWMWRWFTHKE--TRRYVDML 67


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 107  VVIRSNTTVW-HYHCQSASMSYYLHDYSLNAHYYYHHLTYN 226
            ++I    T++ HYH       +Y H      H+++HH  YN
Sbjct: 1020 IIITIIITIFNHYHHHRRRHHHYHHQQQHQFHHHHHHTHYN 1060


>SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 367 TTKFTDFTKSIRKSFHIVTCYKLFVYEPVPF 275
           TTK  + TK   K FH + C++    EP+ F
Sbjct: 196 TTKSEEITKQFEKVFHGIGCFQDKTGEPIEF 226


>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
          Length = 299

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 140 YHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPL 256
           Y C  A +  YL ++S    +Y   +T++    GD+VPL
Sbjct: 138 YLCLMAGLGMYLEEWSFLDSFYAWFITFSTIGFGDLVPL 176


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +2

Query: 242  DVVPLLKERRGEWYWFVHKQLVTRYYMERLSNGF-----GEIGELSGNVVXEGYN----F 394
            D  P  + + G  +W V+K+L  RY + R +N F     G I   +   V   Y+    F
Sbjct: 3241 DYNPSSRNKWGVHFWIVNKRLFVRYTV-RKTNDFTAALMGRIKSNTWEYVGTSYDWNTGF 3299

Query: 395  GYMYHNG 415
             Y++ NG
Sbjct: 3300 AYLFRNG 3306


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +2

Query: 161 MSYYLHDYSLNAHYYYHHLTYN-KWLGGDVVPLL---KERRGEWYWFVHKQLVTRYYMER 328
           +SY   D+  +    +H    + KW+  +V   L   K +  +W W+ H+      Y  R
Sbjct: 103 ISYRASDFLRSDAVVFHGCQLSRKWIKNEVTTSLIHRKPKNQKWVWYEHENPHNIGYDAR 162

Query: 329 LSNGFGEI 352
           + NG  +I
Sbjct: 163 VLNGMIDI 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,022
Number of Sequences: 59808
Number of extensions: 330635
Number of successful extensions: 1111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)