Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J24
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    29   2.4  
At3g19820.2 68416.m02511 cell elongation protein / DWARF1 / DIMI...    27   5.5  
At3g19820.1 68416.m02510 cell elongation protein / DWARF1 / DIMI...    27   5.5  
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    27   7.3  
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ...    27   7.3  
At1g33680.1 68414.m04166 KH domain-containing protein similar to...    27   7.3  
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ...    27   9.6  

>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 176 HDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 289
           HD S N H ++HH   + W   +V+ LL+ R     WF
Sbjct: 88  HDDSDNHHQHHHH---HPWCSDEVLALLRFRSTVENWF 122


>At3g19820.2 68416.m02511 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 134 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 289
           W Y H Q+A       +Y     YY+ H     W G  ++P      G+ +WF
Sbjct: 312 WFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359


>At3g19820.1 68416.m02510 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 134 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 289
           W Y H Q+A       +Y     YY+ H     W G  ++P      G+ +WF
Sbjct: 312 WFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 124 IRPNNNTIIPFVSGRIVLD 68
           I PNNN ++PF+ G   +D
Sbjct: 304 IEPNNNIMVPFIYGGFFID 322


>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
           identical to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
           dehydrogenase [Amaranthus hypochondriacus] GI:2388710
          Length = 501

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 5   YFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVI 115
           ++ NG+I     R+ VH S   E+     KW  ++ I
Sbjct: 287 FWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKI 323


>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 386 YNFGYMYHNGIPYPVRPNHF 445
           ++  Y YH+G PYP + +HF
Sbjct: 423 HSMPYNYHHGGPYPSQGSHF 442


>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 612

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 56  GSRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASMSYYLHD-YSLNAHYYYHH 214
           GS   +YY     + N+    SNT    Y C +       ++ Y  NA YYY+H
Sbjct: 533 GSIFRDYYGKVQVFRNN----SNTRQLCYMCHNRCTGLIFYEGYRRNATYYYNH 582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,898
Number of Sequences: 28952
Number of extensions: 226060
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)