Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J22
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    67   6e-13
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   0.43 
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   0.43 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   0.76 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   1.3  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    24   4.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    23   7.1  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    23   7.1  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    23   9.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 66.9 bits (156), Expect = 6e-13
 Identities = 27/68 (39%), Positives = 43/68 (63%)
 Frame = +2

Query: 2   VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
           +H+KT   +A+T V   D+   + +V A+  NF+ +Y+E RR WGGG++G K+ A +AK 
Sbjct: 190 IHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKR 249

Query: 182 EKAKAREI 205
            KA A  +
Sbjct: 250 AKAAAATV 257


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 209 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 108
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 209 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 108
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 94  QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 186
           Q++  L R+ Q +G +  R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 68  SKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIA 208
           +K+ EA K  FNE  E+L    GGG L  K+    A+L+  +  + A
Sbjct: 23  AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAA 68


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 172 DTRVRLVTEDATAPVSA*LFVTLIEVG 92
           DT +R   +    PV+   FV+L EVG
Sbjct: 278 DTEIRKAEDQTAVPVAKFSFVSLQEVG 304


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 95  NFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIA 208
           NFN  Y+E R+     V+   ++  +A   +   R++A
Sbjct: 871 NFNSAYQEYRQLHQSSVINAAASGALAHSSRLWGRDVA 908


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 95  NFNERYEELRRHWGG 139
           N  ERY++L RH GG
Sbjct: 430 NCCERYKDLERHLGG 444


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 113 EELRRHWGGGVLGNKSNARIAKLEKAKAREIAQK 214
           + L+    GG  G  S+  +A L+  K R+ AQK
Sbjct: 4   DSLKDAIAGGAAGLASSLVVAPLDVVKTRKQAQK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,655
Number of Sequences: 5004
Number of extensions: 14530
Number of successful extensions: 55
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)