Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J22
(293 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 84 2e-17
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 84 2e-17
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 84 2e-17
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 0.49
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 29 0.65
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 2.6
09_04_0551 - 18488584-18490017 26 4.6
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 26 4.6
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 26 4.6
12_02_0361 - 17979979-17979982,17980093-17981045 26 6.1
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 26 6.1
01_06_0065 + 26107522-26107700,26110875-26111253 26 6.1
05_04_0126 + 18252594-18256922 25 8.0
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 25 8.0
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 25 8.0
02_04_0017 + 18937774-18937864,18938505-18940945 25 8.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 84.2 bits (199), Expect = 2e-17
Identities = 35/71 (49%), Positives = 54/71 (76%)
Frame = +2
Query: 2 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
VH+KT + + LT V++ D+ FSK++EAIK NFN++++E+R+ WGGGV+G+KS A+
Sbjct: 186 VHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAR 245
Query: 182 EKAKAREIAQK 214
EK A+E AQ+
Sbjct: 246 EKLLAKEAAQR 256
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 84.2 bits (199), Expect = 2e-17
Identities = 35/71 (49%), Positives = 54/71 (76%)
Frame = +2
Query: 2 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
VH+KT + + LT V++ D+ FSK++EAIK NFN++++E+R+ WGGGV+G+KS A+
Sbjct: 156 VHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAR 215
Query: 182 EKAKAREIAQK 214
EK A+E AQ+
Sbjct: 216 EKLLAKEAAQR 226
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 84.2 bits (199), Expect = 2e-17
Identities = 34/71 (47%), Positives = 55/71 (77%)
Frame = +2
Query: 2 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
VH+KT + + LT V++ D+ FSK++EAIK+NFN++++E+R+ WGGG++G+KS A+
Sbjct: 171 VHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKSQAKTKAR 230
Query: 182 EKAKAREIAQK 214
EK A+E AQ+
Sbjct: 231 EKLLAKEAAQR 241
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -3
Query: 207 AISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPD 46
A + + A SS R L R+PPP LR + R ++V A T E A +P+
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.1 bits (62), Expect = 0.65
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 107 RYEELRRHWGGGVLGNKSNARIAKLEKAK 193
R +EL WGG LGN ++K+EK K
Sbjct: 854 REKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 197 APSPSPAWRYARSTCYRGRHRPSVCVTLRNA 105
APSPSP A + GRH V R+A
Sbjct: 153 APSPSPQMHAASRRHHHGRHHQQVAPKARSA 183
>09_04_0551 - 18488584-18490017
Length = 477
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 207 AISRAFAFSSLAIRAFDLLPRTPPPQCL 124
A++RA + S A +F +LPR P P L
Sbjct: 52 AVARAVSSKSSATVSFHMLPRIPDPPSL 79
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 210 CAISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARS-PDSTF 37
C++ A F S D +P+ PP + +S + +VL+ S + S P S F
Sbjct: 425 CSVFNAITFVSTLASGSDQIPKEPPIEKTLRASIAEISVVLLFSDEMDAGNSSVPISQF 483
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 227 RLSPVSVLSHAPS---PSPAWRYARSTCYRGRHRPSVCVTLRNAH*SWS**LPLPS 69
RLSPVS L+H+ S P+P+ S P+ + R +H S +PLPS
Sbjct: 36 RLSPVSPLTHSSSSKLPTPSSSSGSSGSLSVSRAPASALASRRSH---SGEIPLPS 88
>12_02_0361 - 17979979-17979982,17980093-17981045
Length = 318
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -1
Query: 227 RLSPVSVLSHA---PSPSPAWRYARSTC 153
+LSPVSVL + P SPA+ ++ TC
Sbjct: 126 QLSPVSVLEQSPFQPPASPAYSKSKQTC 153
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 48 DSTFVRATLVQVLRC 4
D +F+RATLV LRC
Sbjct: 464 DPSFIRATLVHFLRC 478
>01_06_0065 + 26107522-26107700,26110875-26111253
Length = 185
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 209 VLSHAPSPSPAWRYARSTCYRGRHRPS 129
+L H P P PAWR C R RP+
Sbjct: 15 LLRHPPCPCPAWRLC---CTPARLRPA 38
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 83 AIKTNFNERYEELRRHWGG-GVLGNKSNARIAK 178
A+ N N YEELRR G V GN ++A K
Sbjct: 662 AMYANPNRSYEELRRLLGSLQVFGNSTDAYATK 694
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 119 LRRHWGGGVLGNKSNARIAKLE 184
LR W G+ GN NA+I + E
Sbjct: 12 LRSFWSSGLFGNNVNAKIFQSE 33
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 206 LSHAPSPSPAWRYARST 156
L H+ S SPAWR R T
Sbjct: 719 LEHSTSASPAWRTGRRT 735
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 209 VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 108
++ H PSPS A RY Y G +RN
Sbjct: 336 MIYHLPSPSKAQRYRVENLYEGPLDDVYATAIRN 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,710,424
Number of Sequences: 37544
Number of extensions: 125942
Number of successful extensions: 561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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