Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J22
(293 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 86 4e-18
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 4e-18
SB_36377| Best HMM Match : zf-CCHC (HMM E-Value=0.0045) 27 2.0
SB_52459| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.0
SB_2576| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.0
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 3.5
SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44) 27 3.5
SB_10298| Best HMM Match : CaMBD (HMM E-Value=0.58) 27 3.5
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 26 4.6
SB_4558| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 26 6.0
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 25 8.0
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 86.2 bits (204), Expect = 4e-18
Identities = 33/68 (48%), Positives = 53/68 (77%)
Frame = +2
Query: 2 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
VH+K T++ +T V D+ + + ++E++KTN+NER++E+R+HWGGG++G KS A AK+
Sbjct: 103 VHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKV 162
Query: 182 EKAKAREI 205
EKAK RE+
Sbjct: 163 EKAKLREL 170
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 86.2 bits (204), Expect = 4e-18
Identities = 33/68 (48%), Positives = 53/68 (77%)
Frame = +2
Query: 2 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
VH+K T++ +T V D+ + + ++E++KTN+NER++E+R+HWGGG++G KS A AK+
Sbjct: 194 VHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKV 253
Query: 182 EKAKAREI 205
EKAK RE+
Sbjct: 254 EKAKLREL 261
>SB_36377| Best HMM Match : zf-CCHC (HMM E-Value=0.0045)
Length = 292
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = -1
Query: 203 SHAPSPSPAWRYARSTCYRGRHRPSVCVTLRNAH*SWS**LPLPSRRRHGLQTPHL*ERR 24
SHA A+ S C + H VC++ R H + + R G Q H E
Sbjct: 23 SHAAGKCKAFGQVCSKCSKKNHFARVCMSTRQDHIASQPQQKPGKQARRGKQNVHQLEES 82
Query: 23 SC 18
SC
Sbjct: 83 SC 84
>SB_52459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = -1
Query: 203 SHAPSPSPAWRYARSTCYRGRHRPSVCVTLRNAH*SWS**LPLPSRRRHGLQTPHL*ERR 24
SHA A+ S C + H VC++ R H + + R G Q H E
Sbjct: 39 SHAAGKCKAFGQVCSKCSKKNHFARVCMSTRQDHKASQPQQKPGKQARRGKQNVHQLEES 98
Query: 23 SC 18
SC
Sbjct: 99 SC 100
>SB_2576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -1
Query: 221 SPVSVLSHAPSPSPA---WRYARSTCY 150
S +S SH+P SP+ W+Y S C+
Sbjct: 135 SKISTFSHSPDASPSTWQWQYNTSVCF 161
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 79 GSYQDQLQ*ALRRVTQTLGRWRPR*QVERAYRQA 180
G Y+D+ +R + LGR+R R VER YR+A
Sbjct: 966 GCYRDK---HIRALPLLLGRFRGRGAVERCYRKA 996
>SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44)
Length = 262
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 73 GSGSYQDQLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 186
G Y DQ++ A+ R+ TLGR R ++RA + A E
Sbjct: 63 GEYPYMDQVRRAIDRIPYTLGRTR----IDRALKLAAE 96
>SB_10298| Best HMM Match : CaMBD (HMM E-Value=0.58)
Length = 266
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 176 WRYARSTCYRGRHRPSVCV 120
W+ R T YR HRPS V
Sbjct: 158 WQNRRETAYRKEHRPSAVV 176
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 50 GDRAAFSKVVEAIKTNFNERYEELRRHWG 136
GD A + ++ + I F RY+ RH+G
Sbjct: 459 GDFARYYRISQGIYGGFTRRYKVFTRHYG 487
>SB_4558| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 207
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 221 SPVSVLSHAPSPSPAWRYARSTCYR-GR-HRPSVC 123
+P SV + SP P + CYR G+ H PS C
Sbjct: 14 TPASVKKVSSSPLPRSKSENKECYRCGKNHHPSKC 48
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 213 FCAISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS 112
F IS A F S + PP QC+ NSS
Sbjct: 424 FAVISYAKIFCSCVLMVMTFSTAEPPWQCVANSS 457
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,294,998
Number of Sequences: 59808
Number of extensions: 132642
Number of successful extensions: 395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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