Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J22
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    83   3e-17
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    83   3e-17
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively...    26   4.1  
Z93385-10|CAB07643.1|  702|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...    25   7.1  
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...    25   7.1  
AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical...    25   7.1  
Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 83.0 bits (196), Expect = 3e-17
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +2

Query: 2   VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
           V RKT  +VAL +V   D++A +K+VE +  NF+ER+EE+R+HWGGGV+  KS+A+  K+
Sbjct: 195 VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKI 254

Query: 182 EKAKAREIAQ 211
           E+A+AR++ +
Sbjct: 255 ERARARDLGK 264


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 83.0 bits (196), Expect = 3e-17
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +2

Query: 2   VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
           V RKT  +VAL +V   D++A +K+VE +  NF+ER+EE+R+HWGGGV+  KS+A+  K+
Sbjct: 175 VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKI 234

Query: 182 EKAKAREIAQ 211
           E+A+AR++ +
Sbjct: 235 ERARARDLGK 244


>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
           protein ZC504.4d protein.
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 171 IRAFDLLPRTPPPQCLRN 118
           +RA  L+PR PPP+  RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254


>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
           protein ZC504.4c protein.
          Length = 1096

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 171 IRAFDLLPRTPPPQCLRN 118
           +RA  L+PR PPP+  RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254


>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
           protein ZC504.4b protein.
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 171 IRAFDLLPRTPPPQCLRN 118
           +RA  L+PR PPP+  RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254


>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
           protein ZC504.4a protein.
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 171 IRAFDLLPRTPPPQCLRN 118
           +RA  L+PR PPP+  RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254


>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 171 IRAFDLLPRTPPPQCLRN 118
           +RA  L+PR PPP+  RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254


>Z93385-10|CAB07643.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 224 LSPVSVLSHAPSPSPAWRYARSTC 153
           ++P+S L+  P+PSP  ++A   C
Sbjct: 1   MTPLSALTSNPAPSPPPKFALGKC 24


>Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 224 LSPVSVLSHAPSPSPAWRYARSTC 153
           ++P+S L+  P+PSP  ++A   C
Sbjct: 1   MTPLSALTSNPAPSPPPKFALGKC 24


>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 200 HAPSPSPAWRYARSTCYRGRHRPSVCVTLR 111
           H PSP  A +Y     Y G H     V ++
Sbjct: 351 HLPSPVTAQKYRMEMLYEGPHDDEAAVAIK 380


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 200 HAPSPSPAWRYARSTCYRGRHRPSVCVTLR 111
           H PSP  A +Y     Y G H     V ++
Sbjct: 351 HLPSPVTAQKYRMEMLYEGPHDDEAAVAIK 380


>AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical
           protein Y46G5A.17 protein.
          Length = 779

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 20  TSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNAR 169
           + V  T++   +RAAF  +++  +T+++ +      HW   +L  K++ R
Sbjct: 403 SGVNKTSLNDIERAAFVVILDDEETHYDPQDPSKLDHWAHNLLHGKAHDR 452


>Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical
           protein H13N06.4b protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 89  KTNFNERYEELRRHWGG---GVLGNKSNARIAKLEKAKAREIAQKQ 217
           +TN N  Y +     G    GVLG K   + AKL+ AK   +++K+
Sbjct: 30  RTNENHSYYKYAYIGGAATAGVLGFKHFVKTAKLDHAKDETMSEKK 75


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 89  KTNFNERYEELRRHWGG---GVLGNKSNARIAKLEKAKAREIAQKQ 217
           +TN N  Y +     G    GVLG K   + AKL+ AK   +++K+
Sbjct: 30  RTNENHSYYKYAYIGGAATAGVLGFKHFVKTAKLDHAKDETMSEKK 75


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
 Frame = +2

Query: 56  RAAFSKVVEAIKTNFNERYEELR-----RHWGGGVLGNKSNARIAKLEKAKAREIAQKQ 217
           +  FS  +E +K  F++R ++L+        G G+L +  + ++ KL K K  ++AQ++
Sbjct: 98  KVLFSGELEHVKV-FDKRVQDLQIKPSEASPGRGILRSPLDKKVKKLAKVKTVKVAQEE 155


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 31  SYKCGVWRPCRLLEGSGSYQDQLQ*ALRRVTQTLGRWRPR 150
           S KC   +P  LLEG   +   L    RR  +T   +RPR
Sbjct: 550 SVKCTACKPQSLLEGMNRFLKMLDITFRRDQET---YRPR 586


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/66 (21%), Positives = 33/66 (50%)
 Frame = +2

Query: 20  TSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAR 199
           T  A     + DRA + ++ E  +T  NE+ +  R          ++NA+ A+  +A+  
Sbjct: 60  TMTAKERRAAADRAKWQRMSEEQRTALNEQRKRRRHSKCDSEQMKEANAKKAEAARARYH 119

Query: 200 EIAQKQ 217
           ++++++
Sbjct: 120 QMSEEE 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,151,845
Number of Sequences: 27780
Number of extensions: 88497
Number of successful extensions: 241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)