Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J22
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   5.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   5.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   7.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 19  HERRSYKCGVWR 54
           HE+ SY   VWR
Sbjct: 346 HEKLSYAFSVWR 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 122  RRHWGGGVLGNKSNARIAKLEK 187
            R  W G +LG     R++  EK
Sbjct: 1002 REDWNGEILGYYVGYRLSSSEK 1023


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 180 SLAIRAFDLLPRTPP 136
           SL +  F+LL  TPP
Sbjct: 550 SLGVLMFELLTGTPP 564


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 101 NERYEELRRHW 133
           ++RY +L+R+W
Sbjct: 24  SDRYSKLKRNW 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,977
Number of Sequences: 438
Number of extensions: 1188
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)