Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J22
         (293 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    85   8e-18
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            85   1e-17
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    31   0.18 
At4g19060.1 68417.m02808 disease resistance protein-related cont...    27   2.2  
At5g42770.1 68418.m05209 Maf family protein contains Pfam domain...    26   5.0  
At5g01170.1 68418.m00021 glycine-rich protein predicted proteins...    26   5.0  
At4g30230.1 68417.m04299 hypothetical protein                          26   5.0  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    25   6.6  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    25   6.6  
At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein st...    25   8.7  
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    25   8.7  
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ...    25   8.7  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 85.0 bits (201), Expect = 8e-18
 Identities = 35/71 (49%), Positives = 53/71 (74%)
 Frame = +2

Query: 2   VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
           VH+KT  ++ LT V++ D+  FSK++EAIK NFN++YEE R+ WGGG++G+KS A+    
Sbjct: 184 VHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAK 243

Query: 182 EKAKAREIAQK 214
           E+  A+E AQ+
Sbjct: 244 ERVIAKEAAQR 254


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 35/71 (49%), Positives = 53/71 (74%)
 Frame = +2

Query: 2   VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKL 181
           VH+KT + + LT V++ D+  FSK++EAIK NFN++YEE R+ WGGG++G+KS A+    
Sbjct: 185 VHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAK 244

Query: 182 EKAKAREIAQK 214
           E+  A+E AQ+
Sbjct: 245 ERVIAKEAAQR 255


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 92  TNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREI-AQKQ 217
           T    R  E++  WGG  LGN     ++KLE+ KA  I A+K+
Sbjct: 780 TRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKAAWIKAEKE 822


>At4g19060.1 68417.m02808 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 383

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 56  RAAFSKVVEAIKTNFNERYEE 118
           ++ F K +E IK++FNE YE+
Sbjct: 18  KSEFDKELEKIKSSFNEEYEK 38


>At5g42770.1 68418.m05209 Maf family protein contains Pfam domain
           PF02545: Maf-like protein
          Length = 233

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 5   HRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEE 118
           H  T +SVA+TN+++G R      V+ ++  FNE  EE
Sbjct: 141 HTATVSSVAVTNLKTGVRKG---GVDRVEIYFNEIPEE 175


>At5g01170.1 68418.m00021 glycine-rich protein predicted proteins,
           Arabidopsis thaliana
          Length = 568

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 44  ESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIA 175
           E  DR + S     ++ + +E + E+R   GGG    +SN+ ++
Sbjct: 448 EEEDRYSRSNSAGMVERSLSESWPEMRNGEGGGPKMRRSNSNVS 491


>At4g30230.1 68417.m04299 hypothetical protein 
          Length = 260

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 203 SHAPSPSPAWRY 168
           S +PSPSP+WR+
Sbjct: 226 SRSPSPSPSWRF 237


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 227 RLSPVSVLSHAPSPSPAWRYARSTCYRGR 141
           RLSP S L   PSP P+ R   S+  R R
Sbjct: 680 RLSPRSTLEAIPSPCPSQRPKPSSSDRRR 708


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 212 SVLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRNAH 102
           S +SH+PS SPA   + S  +   H P+   +   AH
Sbjct: 215 SPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAH 251


>At5g52340.1 68418.m06495 exocyst subunit EXO70 family protein
           strong similarity to unknown protein (emb|CAB83315.1);
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 132 QCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLR 7
           QC    +  S+ ++L       K+ RSP+  FV   + +++R
Sbjct: 366 QCFGEVTVNSVAVLLSFGEAIAKSKRSPEKLFVLLDMYEIMR 407


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +2

Query: 20  TSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAR 199
           T   +    S + +  +   E+IK       ++LR   G G++  K+    ++ +  KA+
Sbjct: 494 TPAPVVTEASSEESGNTATAESIKGISPALVKQLREETGAGMMDCKNALSESEGDMVKAQ 553

Query: 200 EIAQKQG 220
           E  +K+G
Sbjct: 554 EYLRKKG 560


>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
           Pfam profile PF02847: MA3 domain; low similarity to
           programmed cell death 4 protein [Gallus gallus]
           GI:12958564
          Length = 693

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 71  KVVEAIKTNFNERY--EELRRHWGGGVLGNKSNARIAKLEKAKAREIAQK 214
           KV++  KT    R   E + R WGGG +   S     K  K K + + ++
Sbjct: 522 KVIQMAKTLLKARLSGERILRCWGGGGIETNSPGSTVKEVKEKIQILLEE 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,969,955
Number of Sequences: 28952
Number of extensions: 85363
Number of successful extensions: 311
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)