Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J20
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   105   4e-24
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    29   0.47 
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    29   0.47 
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    29   0.47 
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    29   0.47 
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    29   0.47 
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    29   0.47 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   4.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  105 bits (252), Expect = 4e-24
 Identities = 50/134 (37%), Positives = 70/134 (52%)
 Frame = +3

Query: 3   FSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIA 182
           F+YG+ V  +YD G +F+P ILD+  EDL    L+  + + A+SL   YPT+ S  HS+ 
Sbjct: 181 FTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVV 240

Query: 183 NGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           N +KNL+A++  TE  F+     K ++ DPS FV                          
Sbjct: 241 NAYKNLVAVSLATEYTFEGTEQTKAFLADPSAFV--VAAAPAAAAGGEAEAPAAEAAAEE 298

Query: 363 XSESDDDMGFGLFD 404
             ESD+DMGFGLFD
Sbjct: 299 EEESDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESD+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESD+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 455 TDKPIWRSMRLTNITFLCNKYH*LNSKKR 541
           T  P+     L NI FLC K+  L+SKK+
Sbjct: 353 TITPLLSQNDLWNIFFLCTKFWSLHSKKQ 381


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 99  FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 212
           +L GV   +A    +  PT  S PH +  GF   + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,083
Number of Sequences: 5004
Number of extensions: 31178
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)