Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J20
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.85 
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_55751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_920| Best HMM Match : Extensin_2 (HMM E-Value=5.2)                  28   6.0  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESDDDMGFGLFD
Sbjct: 751 ESDDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 369 ESDDDMGFGLFD 404
           ESDDDMGFGLFD
Sbjct: 99  ESDDDMGFGLFD 110


>SB_55751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 114 ANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATT 248
           A +AA +++  +PT  + P + AN    LL IAA T  D   ATT
Sbjct: 44  ATIAATTITT-FPTATNPPITAANRMITLLTIAATT-ADIIAATT 86


>SB_920| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
          Length = 238

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 146 VPDGRVCASFHR--ERFQEPARHRCRH 220
           +P G+ C    R  ERF  P ++RC H
Sbjct: 69  IPKGKHCVKLPRCGERFYNPIKYRCAH 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,486
Number of Sequences: 59808
Number of extensions: 265219
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)