Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J20
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.13 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 131 LVVHRVPDGRVCASFHRERFQEPARHRC 214
           L +H +P+ +V   F  +R +E A  RC
Sbjct: 396 LTIHTIPEVKVTPRFQAKRLKEEANIRC 423


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 447 PPGRTNPYGGRCDLQTLRFYV 509
           PPG    +G     QT+RF V
Sbjct: 273 PPGVPGDHGDHAPKQTVRFKV 293


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 467 IWRSMRLTNITFLCNKY 517
           I R M+ T+ITF  NK+
Sbjct: 37  ILRGMQFTDITFGVNKW 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,523
Number of Sequences: 438
Number of extensions: 2261
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)