Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J20
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      127   4e-30
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   125   2e-29
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   124   4e-29
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro...    28   3.7  
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i...    28   3.7  
At2g29510.1 68415.m03584 expressed protein                             27   6.5  
At2g40070.1 68415.m04923 expressed protein                             27   8.6  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  127 bits (307), Expect = 4e-30
 Identities = 61/133 (45%), Positives = 81/133 (60%)
 Frame = +3

Query: 3   FSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIA 182
           FSYGLVV+ VYD+G++F P +L++  +DL EKF AGV+ + ALSL+I YPTVA+APH   
Sbjct: 186 FSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFL 245

Query: 183 NGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           N +KN+LA+A  TE  F +A  +KE++KDP+KF                           
Sbjct: 246 NAYKNVLAVALATEYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEA 303

Query: 363 XSESDDDMGFGLF 401
             ESD DMGF LF
Sbjct: 304 AEESDGDMGFDLF 316


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  125 bits (302), Expect = 2e-29
 Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
 Frame = +3

Query: 3   FSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIA 182
           FSYGLVV+ VYD+G++F+P +LD+  + L EKF +G++ V +L+L++ YPT+A+APH   
Sbjct: 185 FSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFI 244

Query: 183 NGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           N +KN LAIA  T+  F +A  +KE++KDPSKFV                          
Sbjct: 245 NAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAKVEEK 304

Query: 363 XSESDD---DMGFGLFD 404
             ESD+   + GFGLFD
Sbjct: 305 KEESDEEDYEGGFGLFD 321


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  124 bits (299), Expect = 4e-29
 Identities = 57/134 (42%), Positives = 78/134 (58%)
 Frame = +3

Query: 3   FSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIA 182
           FSYGLVV+ VYD+G++F+P +LD+  + L EKF +G++ V +L+L++ YPT+A+APH   
Sbjct: 185 FSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFI 244

Query: 183 NGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           N +KN LAIA  TE  F +A  +KEY+KDPSKF                           
Sbjct: 245 NAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAKVEEKEE 304

Query: 363 XSESDDDMGFGLFD 404
             E D    FGLFD
Sbjct: 305 SDEEDYGGDFGLFD 318


>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
           protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
           zinc finger-containing protein ZIGA3 GI:10441352 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 483

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 450 PGRTNPYGGRCDLQTL 497
           PG TNP GG+ DLQ L
Sbjct: 385 PGMTNPVGGQADLQKL 400


>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
           identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
           thaliana]; Monovalent cation:proton antiporter family 2
           (CPA2 family) member, PMID:11500563
          Length = 618

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 83  GPSREVPCWSGQRGRALVVHRVPDGRVCAS 172
           G S ++P + G  G   V+H++  GR CA+
Sbjct: 459 GRSLDLPVYFGDAGSKEVLHKIGAGRACAA 488


>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 436 SHQHRRDGQTHMAVDAT 486
           SH HRRDGQ H    AT
Sbjct: 197 SHSHRRDGQFHQTPRAT 213


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 127 RSRCPSGTRRSRLRLIPSRTVSRTCSPS 210
           RS   S T  SR  L PS+T+SR+ +P+
Sbjct: 290 RSTARSSTPTSRPTLPPSKTISRSSTPT 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,382
Number of Sequences: 28952
Number of extensions: 179174
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)