Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J17
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   0.40 
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   0.53 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   2.8  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    24   4.9  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   4.9  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    24   6.5  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    23   8.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    23   8.6  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    23   8.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.6  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 101 IKDLENGLAEASINRGGLGLDFVNIKL--KSERGSGFKYVVEIY 226
           IK L  G +   I +G    D ++I +  KSE  SGFK+ V++Y
Sbjct: 394 IKSLVEGNSAYEIEKGAQEPDPMSIDMTDKSETVSGFKHDVDVY 437


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 135 DASAKPFSKSLIAI--PLIFCSGCGNWK*TSSTRFIKGIADDS 13
           D  A PF K+L +   P    S  GN+K   +T F KG++ D+
Sbjct: 465 DKQASPFVKNLSSTSSPFSQSSAFGNFKFGQATSFDKGLSTDA 507


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 20  SAIPLIKRVEEVYFQFPQPEQKIKGIAIKDLE 115
           S++PL +RVEEV F    PE+ I+ +++  +E
Sbjct: 9   SSVPL-RRVEEVQFGILSPEE-IRSMSVAKIE 38


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 195 PLSLFSLMLTKSRPNPPRLID 133
           PLSL+ L +    PN P+L++
Sbjct: 208 PLSLYPLTVLTQNPNLPKLLE 228


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +2

Query: 5   RVIESSAIPLIKRVEEVYFQFPQPEQKIKGIAIKDL 112
           RV +S++ PL   +  +Y+  PQP +K++ ++++ L
Sbjct: 111 RVFDSASTPLKINLHIIYYHPPQP-RKMQFLSLEPL 145


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 83  KIKGIAIKDLENGLAEASINRGG 151
           K   I +KDLEN L +++I   G
Sbjct: 294 KCPSIMVKDLENSLLQSNIRNVG 316


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 204 NPDPLSLFSLMLTKSRPNP 148
           NP P S   L  T S PNP
Sbjct: 215 NPTPFSSSPLHFTNSSPNP 233


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 46  RRSLFPVPATRTENQRYSDQRFREWLSGGIDQPRRIRSRLC*HQTEERK 192
           R++ +    T+ E +RY   R  E  S  I   ++I++R+     EER+
Sbjct: 385 RKTPYEEAMTKLEEERYEFDRHIEATSWTIKSLKKIQNRINELPEEERE 433


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 71  QPEQKIKGIAIKDLENGLAEASINRGGLGLDFVNI 175
           QPE +   IA     N + EASI     G DF NI
Sbjct: 355 QPEPQYSRIAYFYSYNVVYEASIQTATDGNDFANI 389


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 26   IPLIKRVEEVYFQFP 70
            IPL  + EE YF FP
Sbjct: 2107 IPLFFKAEESYFNFP 2121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,096
Number of Sequences: 5004
Number of extensions: 21224
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)