Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J17
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458...    28   1.9  
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671...    26   5.9  
03_05_0051 - 20288456-20291728                                         26   5.9  

>09_06_0067 -
           20645012-20645095,20645365-20645466,20645583-20645828,
           20646042-20646236,20646343-20646636,20646952-20647134,
           20647534-20647593,20647796-20648002,20648081-20648282,
           20648367-20648494,20648759-20648842,20648955-20649134,
           20649281-20649372,20649620-20649789,20650226-20650337,
           20650451-20650554,20651262-20651371
          Length = 850

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 222 ISTTYLNPDPLSLFSLMLTKSRPNPPRLIDASA 124
           IS TY NP P+ +   ML K    PPR  D+ A
Sbjct: 620 ISNTYENPSPMIVDEAMLEKVL-GPPRFDDSEA 651


>03_05_0893 +
           28566436-28566501,28566624-28566903,28567002-28567188,
           28567353-28567423,28567523-28567600,28567687-28567774,
           28567875-28567930,28568054-28568121
          Length = 297

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 133 IDQPRRIRSRLC*HQTEERKGIRVQICSRNLCL 231
           +D+ R+ ++ +C H  EE+   +  IC+ ++CL
Sbjct: 229 MDEVRKNKNWMCPHCIEEKGTKKFWICNSSICL 261


>03_05_0051 - 20288456-20291728
          Length = 1090

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 114 SKSLIAIPLIFCSGCGNWK 58
           SK LI + LIF SGC  W+
Sbjct: 787 SKWLINLELIFLSGCNAWE 805


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,244,921
Number of Sequences: 37544
Number of extensions: 132823
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)