Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J17
(325 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3... 30 0.41
At4g28110.1 68417.m04032 myb family transcription factor (MYB41)... 28 1.2
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 28 1.6
At5g41050.1 68418.m04990 expressed protein 27 2.9
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor... 27 3.8
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 27 3.8
At5g47490.1 68418.m05864 expressed protein 26 5.0
At3g57680.1 68416.m06426 peptidase S41 family protein similar to... 26 5.0
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 26 5.0
At4g15430.1 68417.m02360 early-responsive to dehydration protein... 26 6.7
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 26 6.7
At5g47480.1 68418.m05863 expressed protein 25 8.8
>At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3)
identical to Cytochrome P450 98A3 (SP|O22203)
[Arabidopsis thaliana]; similar to gi:17978651 from
Pinus taeda
Length = 508
Score = 29.9 bits (64), Expect = 0.41
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 44 VEEVYFQFPQPEQKIKGIAIKDLENGLAEASINRGGLGLDFVNIK-LKSERGSGFKYVV 217
VE V+ PE + KG+ ++ +A +I R G F+N + + E+G FK +V
Sbjct: 151 VESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRFMNAEGVVDEQGLEFKAIV 209
>At4g28110.1 68417.m04032 myb family transcription factor (MYB41)
contains PFAM profile: myb DNA binding protein PF00249
Length = 282
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 279 IGTMYTFILNKTQQHS*A*ISTTYLNPDPLSLFSLMLTKSRPNP 148
+ ++ + + N+ + A +++ LNPD L L SL+L PNP
Sbjct: 135 LSSLLSALFNQPNFSAVATHASSLLNPDVLRLASLLLPLQNPNP 178
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +2
Query: 8 VIESSAIPLIKRVEEVYFQFPQPEQKIKGIAIKDLENGLAEASINRGGLGLD 163
++E ++PL K V+E+Y + + + + +A+K + + ++ G L +D
Sbjct: 87 LMEEMSLPLSKLVDEIYLKLKEKTESVTMVAVKSAVVSVGQ-RVSYGVLNVD 137
>At5g41050.1 68418.m04990 expressed protein
Length = 172
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 192 LSLFSLMLTKSRPNPPRLIDASAKPFSKSLIAIPLIFCSGCGNWK*TSSTRFIKGI 25
L + L+L N L +SAKP K + + L++C C N ++ + FI G+
Sbjct: 5 LIMLLLLLQLLSLNSLSLKHSSAKPNGK-ITVMGLVYCDVCSNNSFSNHSYFIPGV 59
>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLH) nearly identical to magnesium chelatase
subunit GI:1154627 from [Arabidopsis thaliana]; contains
Pfam profile: PF02514 CobN/magnesium chelatase family
protein
Length = 1381
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 192 LSLFSLMLTKSRPNPPRLIDASAKPFSKSLIAIPLIF 82
L+ F+L+ +R + PR I+A K L+A+PL+F
Sbjct: 389 LTGFALVGGPARQDHPRAIEALKKLDVPYLVAVPLVF 425
>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 369
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/26 (42%), Positives = 21/26 (80%), Gaps = 2/26 (7%)
Frame = +2
Query: 158 LDFVNIK--LKSERGSGFKYVVEIYA 229
+DF IK ++++ G+G+K+V++IYA
Sbjct: 136 MDFSTIKNQMEAKDGTGYKHVMQIYA 161
>At5g47490.1 68418.m05864 expressed protein
Length = 1361
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 82 ENQRYSDQRFREWLSGGIDQP 144
ENQ Y D + + W+ G++ P
Sbjct: 1120 ENQFYYDDKLKRWVERGVEPP 1140
>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
PSII D1 protein processing enzyme (GI::7268527)
[Arabidopsis thaliana]; similar to SP|Q55669
Carboxyl-terminal processing protease precursor
(Photosystem II D1 protein processing peptidase) (EC
3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
contains Pfam profile PF03572: Peptidase family S41B
Length = 516
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 83 KIKGIAIKDLENGLAEASINRGGLGLDFVNIKLKSERGSG 202
+I G + D+++ A + RG +G FV IKLK+ GSG
Sbjct: 234 EINGEKLDDVDSEAAAQKL-RGRVGT-FVTIKLKNVNGSG 271
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 204 NPDPLSLFSLMLTKSRPNPPRLIDASAKPFS-KSLIAIPLIFCS 76
NPDP+++ ++ S P P RL + F+ KS +PL+ S
Sbjct: 7 NPDPITVPLVLKLCSFPPPRRLFSLRLRRFTRKSSSLLPLVAVS 50
>At4g15430.1 68417.m02360 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 756
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 119 GLAEASINRGGLGLDFVNIKLKS 187
GL +SI GG G F+N+ +S
Sbjct: 46 GLRSSSIQTGGFGSKFINLDFRS 68
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 171 LTKSRPNPPRLIDASAKPFSKSLIAIPLIFCSGCGNWK 58
LTK P D PFS S I P IF C +W+
Sbjct: 710 LTKCLHYEPEATDDGIAPFSPSQIGAPPIFII-CKDWQ 746
>At5g47480.1 68418.m05863 expressed protein
Length = 1350
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 82 ENQRYSDQRFREWLSGGIDQP 144
ENQ Y D + W+ G++ P
Sbjct: 1097 ENQFYYDDNLKRWVERGVEPP 1117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,939,489
Number of Sequences: 28952
Number of extensions: 110016
Number of successful extensions: 273
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -