Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J16
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 27 1.3
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 27 1.3
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 1.8
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 26 2.3
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 2.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.1
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 25 3.1
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 3.1
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 3.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 5.4
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 24 9.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 9.4
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 166 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKI 270
K+YR L I+ LVGS ++ D+ + +S+ +I
Sbjct: 330 KLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRI 364
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 1.3
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 253 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP 381
NSIF Q PTT+ T T + S V N G +T P
Sbjct: 64 NSIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQP 106
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 274 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGR 366
+ +PT T P + VS PSA P + + N +
Sbjct: 164 SSSPTNTPSPNLPVSQPSASPHYSGDKNSAK 194
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = -1
Query: 324 WGTNSH-----GWFLSSCWCLIRYFENAVYFFEVYIIGVCL 217
WG H W ++ WCL F + + +F V GV L
Sbjct: 349 WGMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLL 389
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 298 KPTMTVSAPSAVPT 339
KPT T SAPSA PT
Sbjct: 292 KPTATTSAPSASPT 305
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 256 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNG 354
S F+ PN+AP+T + +P+ NTNG
Sbjct: 295 SNFRSPNRAPSTNNRYRGWNGSPTPAAGNNTNG 327
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = -1
Query: 201 DQYQDS*YSVHLSTVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFV 40
D D Y++ L +C F + T+ S + + + +CFL++ F+
Sbjct: 180 DDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFL 233
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 166 KMYRILAILVLVGSAHAQANANDIDLEEINSIFK--IPNQAPTTTKKPTMTV 315
K+ ++ + + +AHA NANDI +N K + P +KK +++
Sbjct: 43 KVVQLRSFIPFKNAAHALENANDISEGVLNDFLKNFLELNLPKASKKKKVSL 94
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 162 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFI 49
TV ++ Y+I + T+ N FL VS+C +I+ +
Sbjct: 45 TVPKWAYKIVTYSLTIQFNFKSLLFLFFVSICVVILVV 82
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 271 PNQAPTTTKKPTMTVSAPSAVPTVN-TNGNR 360
P P+T ++ +AP P VN TN NR
Sbjct: 315 PQDQPSTQQQQPQRTAAPPNNPNVNATNNNR 345
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = -1
Query: 162 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIF 46
++C F Y + N T NT V + +FIF
Sbjct: 343 SICFFIYSAVGSRALYHKNGTSNTRAGAVMIVMACLFIF 381
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 289 TTKKPTMTVSAPSAVPTVNTNGNRGRY 369
T+K PT++ + SA P + +NG Y
Sbjct: 90 TSKNPTVSSTTSSANPAIVSNGGSPFY 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,326
Number of Sequences: 5004
Number of extensions: 26739
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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