Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J16
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 1.3
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 27 5.1
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 27 5.1
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777... 27 5.1
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 27 6.7
04_04_0042 + 22328464-22329858 27 6.7
01_05_0128 + 18413029-18413318,18413946-18414139,18414447-18414553 27 6.7
04_01_0252 - 3329712-3331061 26 8.9
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 26 8.9
01_06_0283 + 28170040-28170186,28170296-28170895 26 8.9
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 214 AQANANDIDLEEINSIFKIPNQAPTTTK--KPTM 309
++A AN I +E I K+P++APT T+ KP M
Sbjct: 892 SRAEANMISVERILQYTKLPSEAPTITEGSKPPM 925
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 27.1 bits (57), Expect = 5.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 175 RILAILVLVGSAHA-QANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 336
R + + G A A +A IDLE N K P+Q T +P + V P VP
Sbjct: 417 RTASSTINAGDAQACSTSATHIDLENKNGDSKTPSQDKRETNQPPIRV-VPFPVP 470
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 274 NQAPTTTKKPTMTVSAPSAVPTV 342
++APTT K+P+ T PS P +
Sbjct: 314 SRAPTTQKQPSSTFFTPSTTPKI 336
>07_03_1115 -
24076506-24076677,24077169-24077266,24077622-24077743,
24079059-24079235,24079809-24079897,24079919-24079965,
24080423-24080519,24080600-24080682,24080716-24080796,
24081043-24081199,24081323-24081750,24081985-24082014,
24083180-24083300,24083432-24083697
Length = 655
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 207 CSRPGKRQ*YRPRRNKQH---FQNTESSTNNY*ETNHDC*CPISCSDCKYQR 353
C + G Q P + H FQ SST + + N DC C S C Y+R
Sbjct: 122 CEQCGNHQSESPNIIEAHDPRFQPDLSSTYSPVKCNVDCTCDNERSQCTYER 173
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 220 ANANDIDLEEINSIFKIPN-QAPTTTKKPTMTVSAPSAVPTVN 345
A+A D EE+NS + N Q P T+ PT +S+ T+N
Sbjct: 384 ADAADNTEEEMNSSEQTVNCQTPEATETPTEEISSQHIQETIN 426
>04_04_0042 + 22328464-22329858
Length = 464
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 283 PTTTKKPTMTVSAPSAVPTVNTN 351
PTTT T T +AP+ PT + N
Sbjct: 298 PTTTTTATATATAPAPAPTPSPN 320
>01_05_0128 + 18413029-18413318,18413946-18414139,18414447-18414553
Length = 196
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 280 APTTTKKPTMTVSAPSAVPTVNTNGNRGR 366
A T MTVS SA +V GNRGR
Sbjct: 12 AVPTAASTAMTVSVASAGGSVGRGGNRGR 40
>04_01_0252 - 3329712-3331061
Length = 449
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 228 Q*YRPRRNKQHFQNTESSTNNY*ETNHDC*CPI 326
Q + P+ ++++ N S+TN TNH CPI
Sbjct: 282 QEFLPQEDERNADNNNSTTNADNTTNHHGSCPI 314
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 262 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPD 384
++I P T P S P+ P V+ + R D D D
Sbjct: 101 YQITPAKPATVTAPAAAASLPAPPPPVSARERQRRRDVDDD 141
>01_06_0283 + 28170040-28170186,28170296-28170895
Length = 248
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 123 KTLNSNITDNTFLAVVSLCFLIIFIFFVG---NRSLASPAHS 7
+TL +NI +T LA ++ + + F+G RS ASP+ S
Sbjct: 60 QTLRNNIMASTVLATTAITLVSVISVFLGATAGRSPASPSSS 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,625,126
Number of Sequences: 37544
Number of extensions: 143824
Number of successful extensions: 414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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