Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J16
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)               29   1.7  
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     28   2.3  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_6912| Best HMM Match : rve (HMM E-Value=4.8e-35)                    28   3.0  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              27   4.0  
SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)                      27   5.2  
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_8229| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)                      27   6.9  
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)               27   6.9  
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     26   9.2  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)
          Length = 159

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 229 NDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 348
           ++ID  E N I  + N    +TK PTM     SA P++NT
Sbjct: 108 SEIDASEGNKIIGLDNSILASTKPPTMK-RVRSAGPSLNT 146


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 211 HAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP-TVNTNGN 357
           H +++A    +E INSI +   + PTTT++   +V      P  +N NG+
Sbjct: 588 HLESHAGHYPIETINSIRQRHGRPPTTTEELLNSVPQGDTDPNALNRNGD 637


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 226  ANDI----DLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 336
            AND+    +L ++     +P Q P   K+P +TVS PS  P
Sbjct: 1204 ANDLQSSTELAQVPMQTTVPKQIPEEFKEPEITVSEPSLEP 1244


>SB_6912| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 440

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 226 ANDI----DLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 336
           AND+    +L ++     +P Q P   K+P +TVS PS  P
Sbjct: 354 ANDLQSSTELAQVPMQTTVPKQIPEEFKEPEITVSEPSLEP 394


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 280 APTTTKKPTMTVSAPSAVPTVNTNGNRG-RYDTDPD 384
           APTTT  PT T +AP+   T N + N    Y T+ D
Sbjct: 47  APTTTTAPT-TTTAPTTTTTPNNDYNTSDDYSTNND 81



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 280 APTTTKKPTMTVS-APSAVPTVNTNGNRGRYDTDPD 384
           APTTT  PT T +   +  PT  T  N   Y+T  D
Sbjct: 41  APTTTTAPTTTTAPTTTTAPTTTTTPNND-YNTSDD 75


>SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)
          Length = 143

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 250 INSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTD 378
           IN +   PNQA   T +       P  V  V+ + +R RYD D
Sbjct: 93  INRVPPPPNQATLPTGEHGRIAPNPPPVHNVHKDASRRRYDQD 135


>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 241 LEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 348
           +E  N++       PT T +PT TV   S V   NT
Sbjct: 83  VEPTNTVEPTSTAEPTNTVEPTNTVEPTSTVEPTNT 118



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 241 LEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 348
           +E  N++       PT T +PT TV   S V   NT
Sbjct: 101 VEPTNTVEPTSTVEPTNTVEPTSTVEPTSTVEPTNT 136


>SB_8229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +1

Query: 223 NANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTD 378
           N ND D +  N      +   TTT   T T +  +   T N N N    + D
Sbjct: 99  NDNDNDNDNDNDNDNDNDNDTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNMD 150


>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
          Length = 230

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 253 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNR 360
           N ++ +  +  + T KPT T + P+ +PT  T   R
Sbjct: 107 NYVYGVQARGSSPTNKPTETETLPTTLPTTPTPTKR 142


>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
          Length = 358

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 271 PNQAPTTTKKPTMTVSAPSAVPTVNTN 351
           PN+ PTT K P+ T S+P      +T+
Sbjct: 99  PNETPTTEKLPSPTPSSPDTAHIDSTS 125


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 271 PNQAPTTTKKPTMTVSAP 324
           P   PTTT +PT T  AP
Sbjct: 600 PTHPPTTTARPTSTAPAP 617


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 253 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP 381
           +S+    ++A   + + T+T S+    PT  + G++ RYD+ P
Sbjct: 504 SSMTSAGSRASLASPEGTLTPSSAGISPTPTSQGDKFRYDSVP 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,158
Number of Sequences: 59808
Number of extensions: 182171
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)