Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J16
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    30   0.46 
At5g15060.1 68418.m01765 hypothetical protein                          28   1.9  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   3.3  
At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identic...    27   4.3  
At2g38070.1 68415.m04673 expressed protein  and genscan                26   7.5  
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    26   9.9  
At5g14400.1 68418.m01682 cytochrome P450 family protein similar ...    26   9.9  

>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 166 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKIPNQAPT-TTKKPTMTVSAPSAVP 336
           + + +L +L L  +    A+A     ++  S    P +APT TTK P+    AP+A P
Sbjct: 3   RQFVVLVLLTLTIATAFAADAPSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAP 60


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 190 LVLVGS--AHAQANANDIDLEEI 252
           L+LVGS  +HA AN ND++LE +
Sbjct: 170 LILVGSNLSHANANENDVNLEAL 192


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 193 VLVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYD 372
           V  G + A +   D D  EI  + K  N+   +T+KP +     +    V T+GN  R D
Sbjct: 373 VAQGGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSD 432


>At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identical
           to AtHVA22a [Arabidopsis thaliana] GI:4884932
          Length = 177

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 291 SCWCLIRYFENAVYFFEVYI 232
           +CW +I YF  A Y +E ++
Sbjct: 83  TCWLVIPYFSGAAYVYEHFV 102


>At2g38070.1 68415.m04673 expressed protein  and genscan
          Length = 619

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 223 NANDIDLEEINSIFKIP 273
           N ++IDLE INSI K P
Sbjct: 157 NCSEIDLERINSIVKSP 173


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 204 TDQYQDS*YSVHLSTVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFF 43
           ++ YQ   Y + L +   + Y    K K     IT N+F  VV + ++ +F F+
Sbjct: 40  SEGYQSIPYVISLFSAMLWMYYAMIK-KDAMMLITINSFAFVVQIVYISLFFFY 92


>At5g14400.1 68418.m01682 cytochrome P450 family protein similar to
           steroid 22-alpha-hydroxylase; DWF4; CYP90B1 (GI:2935342)
           [Arabidopsis thaliana]
          Length = 439

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 376 LYHSVLDYRWYLQSEQL 326
           L+H VL YRW ++S+++
Sbjct: 398 LHHLVLSYRWKIKSDEM 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,139,093
Number of Sequences: 28952
Number of extensions: 126074
Number of successful extensions: 330
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)