Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J15
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38320.1 68415.m04708 expressed protein                             29   2.0  
At3g51350.1 68416.m05622 aspartyl protease family protein contai...    23   8.8  

>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 348 MLDKTRKSKMDYVRQSVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESN 518
           +L++ R  +M YV  S+  G     VC       NP+ M ++   S  +T   LE N
Sbjct: 120 LLERLRNKRMVYVGDSLNRGQWVSMVCMVSSVITNPKAMYMHNNGSNLITFKALEYN 176


>At3g51350.1 68416.m05622 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 23.4 bits (48), Expect(2) = 8.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 438 PPEINPEDMTLNERCSRAVTAFPLES 515
           PP INP + T N     A    PL S
Sbjct: 491 PPPINPRNSTGNPGTGGAANLIPLAS 516



 Score = 21.8 bits (44), Expect(2) = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 387 RQSVCNGPETFSVCCGPPPEI 449
           +QS+C   E+      PPPE+
Sbjct: 448 KQSLCFEDESLESTTPPPPEV 468


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,142
Number of Sequences: 28952
Number of extensions: 220300
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)