Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J14
(436 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 142 1e-34
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 28 3.8
SB_13533| Best HMM Match : C1_4 (HMM E-Value=0.66) 28 3.8
SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06) 27 5.0
SB_17120| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1) 27 8.8
SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028) 27 8.8
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 142 bits (344), Expect = 1e-34
Identities = 71/98 (72%), Positives = 74/98 (75%)
Frame = +1
Query: 1 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 180
HIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAMLAAQDVA +CK +GIT
Sbjct: 203 HIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAARCKEIGIT 262
Query: 181 ALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 294
ALHIKLRA AQ MKIGRI
Sbjct: 263 ALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 29.9 bits (64), Expect = 0.95
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 144 LCSQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECV 22
L + S + SL+T H H+S NS S + N+H V
Sbjct: 862 LVKRRSSISRSLVTAQDHLHSSRENSNSTSVNEPSNLHNDV 902
>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +3
Query: 198 PCDWR*QDKDSWTWCPVCSPCSRSFQHEDWPH*RCD----PCAV 317
P +W D W P+C ++ D+PH C+ PC +
Sbjct: 578 PYEWNYMDITKW---PICKKSQKNVSRLDYPHMNCEITARPCCI 618
>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
Length = 230
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 1 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 108
+I +FND + DLSG+ETI ++ K++ +RD
Sbjct: 156 YIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189
>SB_13533| Best HMM Match : C1_4 (HMM E-Value=0.66)
Length = 146
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 225 DSWTWCPVCSPCSR 266
D W+ CP+CS C+R
Sbjct: 114 DVWSMCPMCSQCAR 127
>SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 403 LLYSKSTVSLA*KITACVLFVHPSCVWSQTAQGSH 299
LL+ V++ ++ + ++F HP + SQ QG H
Sbjct: 94 LLHKTVKVAVVARVVSDIIFSHPYWLTSQNCQGGH 128
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 403 LLYSKSTVSLA*KITACVLFVHPSCVWSQTAQGSH 299
LL+ V++ ++ + ++F HP + SQ QG H
Sbjct: 145 LLHKTVKVAVVARVVSDIIFSHPYWLTSQNCQGGH 179
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 403 LLYSKSTVSLA*KITACVLFVHPSCVWSQTAQGSH 299
LL+ V+ ++ + ++F HP + SQ QG H
Sbjct: 43 LLHKTVKVATVARVVSDIIFSHPYWITSQNCQGCH 77
>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
Length = 141
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 55 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 192
R AR+ V A DEA+ + QD+ KCK LG+T + I
Sbjct: 63 RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108
>SB_17120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 365 NYSLRPLRPPFLRVESDGTGVTSSMR 288
NY L PLR P R E+ +G+ ++R
Sbjct: 70 NYELSPLRGPCCRSENGASGIQVALR 95
>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
Length = 1318
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -1
Query: 346 FVHPSCVWSQTAQGSHLQCGQSSCWNEREHGEQTGHQVQESLSCYLQSHGA*C 188
F+ + AQ S+L C + W + GEQT H L Y Q A C
Sbjct: 1059 FIETLLNYPAEAQNSYLAC---ALWEQDTAGEQTLHNRSSVLDRYRQRIDASC 1108
>SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028)
Length = 379
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 306 GHIFNAANLHAGTSE-STESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILC 139
GH+F+A +L + ++ L RS+S+CL + + + G PQG + C
Sbjct: 194 GHVFDALHLRKIRALCKRKAFLQGRSQSVCLDGKTSSSQLLNGGIPQGTRLRPILFC 250
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.129 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,038
Number of Sequences: 59808
Number of extensions: 252672
Number of successful extensions: 662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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