Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J14
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   161   2e-40
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           161   2e-40
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   161   2e-40
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    36   0.016
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    33   0.063
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    29   1.8  
At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    27   5.5  
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ...    27   7.2  
At1g52780.1 68414.m05966 expressed protein                             26   9.5  
At1g01760.1 68414.m00095 adenosine-deaminase family / editase fa...    26   9.5  

>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  161 bits (391), Expect = 2e-40
 Identities = 75/109 (68%), Positives = 85/109 (77%)
 Frame = +1

Query: 1   HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 180
           HIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDVA++CK LGIT
Sbjct: 31  HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 90

Query: 181 ALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 327
           A+H+KLRA            AQ          MKIGRIEDVTP+P+DST
Sbjct: 91  AMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  161 bits (391), Expect = 2e-40
 Identities = 75/109 (68%), Positives = 85/109 (77%)
 Frame = +1

Query: 1   HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 180
           HIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDVA++CK LGIT
Sbjct: 31  HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 90

Query: 181 ALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 327
           A+H+KLRA            AQ          MKIGRIEDVTP+P+DST
Sbjct: 91  AMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  161 bits (390), Expect = 2e-40
 Identities = 74/109 (67%), Positives = 85/109 (77%)
 Frame = +1

Query: 1   HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 180
           H+FASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDVA++CK LGIT
Sbjct: 31  HVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGIT 90

Query: 181 ALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 327
           A+H+KLRA            AQ          MKIGRIEDVTP+P+DST
Sbjct: 91  AIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -2

Query: 276 AGTSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNIL-CSQHSGVG*SLITI 100
           +G S+S+ S    +S S+   TS     NVQ      F FL  +   +Q  G+G +L  I
Sbjct: 151 SGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLGGIGLNLAAI 210

Query: 99  SLHFHASGNTGNSF 58
           + +   +GNT +SF
Sbjct: 211 NGNNGGNGNTSSSF 224


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 1   HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 180
           HI    N+TFV VTD  G       +G +       + + Y A   A+++  + K +G+ 
Sbjct: 197 HIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLK 256

Query: 181 ALHIKL 198
           ++ +K+
Sbjct: 257 SVVVKV 262


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 377 LSLKNYSLRPLRPPFLRVESDGTGVTSSMR 288
           L +  Y   P+ PP +  E DGT + S+MR
Sbjct: 220 LGIVVYLFLPVNPPTVEAERDGTEIDSTMR 249


>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 76  TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 183
           +GG+++K D +E   +     A  V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812


>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 801

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 369 KKLQPASSSSTLPACGVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSR 202
           KK++P S       C VR    ++  A+++H       ES++   S   C V+S +
Sbjct: 635 KKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKVNPPSSGCCCVSSQK 690


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 103 RDEASPYAAMLAAQDVAEKCKTLGITALHIKL 198
           RDE++P  +     DV +KCK++  +A  +KL
Sbjct: 43  RDESAPKISYDRINDVKKKCKSVLSSASELKL 74


>At1g01760.1 68414.m00095 adenosine-deaminase family / editase
           family similar to double-stranded RNA-specific editase
           GB:AAF69673 GI:7770275 from [Danio rerio]
          Length = 325

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 322 SQTAQGSHLQCGQSSCWN 269
           S+TAQ + L CG S CWN
Sbjct: 275 SETAQAT-LTCGYSLCWN 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,088
Number of Sequences: 28952
Number of extensions: 165944
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)