Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J13
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829...    30   1.7  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    29   3.0  
04_04_1687 - 35365766-35366356,35367137-35368135                       29   3.0  
03_06_0047 + 31266940-31268394                                         29   3.9  
01_01_0363 + 2850954-2853675,2853819-2854225                           28   6.9  

>08_02_1631 +
           28381248-28381418,28382069-28382144,28382925-28382995,
           28383375-28383460,28384359-28384423,28384727-28385067
          Length = 269

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 280 YAPVCGTDGNTYPNKCSLECSRPLPPSLEMKHRGECQEVKVADIQPCICNAGDQTGLR*R 459
           Y P   +  +TYP +     + PLPP +++  R E +    A ++  +    D    R R
Sbjct: 142 YHPCTNSSNSTYPEEGRGATNTPLPPFVKVSKRAETRFSLAAPLE--VMGRHDNALKRGR 199

Query: 460 --RRHLRQPVPVELRHT 504
             R+  R P PV L+ T
Sbjct: 200 DTRKCRRCPPPVSLQMT 216


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 54  YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 221
           Y  ++S R  AN   ++N  A+  RV+      +R  + DLP    L++REG +  RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 262 CVCTFIYAPVCGTDGNTYPNKCSLECSRPLPPSLEMKHR 378
           C       PV GT  + +P   + +C  PLP  L   HR
Sbjct: 32  CAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPLPSAHR 70


>03_06_0047 + 31266940-31268394
          Length = 484

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 130 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 276
           R +   C  D  TY     ++CE DK    LK+ K    ++  P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 416 GCISATLTSWHSPRCFISRDGGNGREHSSEHLLG*VFPS 300
           G  S TLTSW+S   F + +G     H    ++G   PS
Sbjct: 31  GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,891
Number of Sequences: 37544
Number of extensions: 407427
Number of successful extensions: 1292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)