Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J12
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 27 1.6
02_02_0726 - 13374061-13374151,13374576-13374787,13374990-133750... 27 2.1
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 27 2.7
10_03_0046 + 7357777-7357992 27 2.7
07_03_0730 + 21030123-21030338 27 2.7
01_06_1064 + 34237919-34238155 27 2.7
10_07_0059 + 12475452-12475785,12475889-12476523 26 3.6
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 26 4.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 25 6.3
08_01_0554 - 4851698-4851943,4852041-4852760 25 6.3
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 25 6.3
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798 25 8.3
05_05_0287 + 23868503-23869045 25 8.3
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052... 25 8.3
03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405 25 8.3
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 25 8.3
01_06_1435 + 37351653-37351990,37352241-37352424 25 8.3
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 144 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSE 46
VPW + ARR + G+ + HR N Y V +
Sbjct: 186 VPWMREDLFARRDARGIDKVRSSHRVNAYDVED 218
>02_02_0726 -
13374061-13374151,13374576-13374787,13374990-13375002,
13375318-13375655
Length = 217
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 96 VSAGKRHHRCNCYYVSEHHL 37
+S K+H +C+ ++VSE H+
Sbjct: 39 ISNAKKHEQCDLFHVSESHI 58
>10_08_0917 -
21550332-21550685,21550726-21550765,21551766-21551767,
21552094-21552633
Length = 311
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 153 ISSVPWDHVEARARRCSGGVSAG 85
+SS+P DH A A +GG+S G
Sbjct: 206 VSSIPKDHAAAAAVVANGGLSGG 228
>10_03_0046 + 7357777-7357992
Length = 71
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 85
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>07_03_0730 + 21030123-21030338
Length = 71
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 85
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>01_06_1064 + 34237919-34238155
Length = 78
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 85
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>10_07_0059 + 12475452-12475785,12475889-12476523
Length = 322
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 15 DLPEIYRKDDVHLRSSSCIGGGAYQRL 95
D PE++ DVH +S GGAY+ L
Sbjct: 260 DDPEVFDPYDVHGGLASYFAGGAYESL 286
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 25.8 bits (54), Expect = 4.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 84 KRHHRCNCYYVSEHHLF 34
+R H CNC ++ H LF
Sbjct: 529 RRIHHCNCNHIPRHTLF 545
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -1
Query: 219 GMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRC 67
G ++ S + R W L S W ++ RA RC V A RC
Sbjct: 74 GRLNYRDRASMAAACRTWRDLGASPCLWSALDLRAHRCDAEV-ASSLSSRC 123
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 109 PPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAG 213
P +A D GH ++ TV + +TAV+ V AG
Sbjct: 253 PVAAGADSGGGHGGNLSTVVGIFAASTAVTMVAAG 287
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/49 (24%), Positives = 20/49 (40%)
Frame = -1
Query: 213 TSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRC 67
+SFY A S + C ++ WD ++ R +G + K C
Sbjct: 237 SSFYEAVSQDYKSESFNCFSVIKAAWDLIDERGSTDAGLLQLSKTFRAC 285
>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
Length = 244
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 135 DHVEARARRCSGGVSAGKR 79
D EA A RC G +AG+R
Sbjct: 187 DRAEATAARCPGWAAAGRR 205
>05_05_0287 + 23868503-23869045
Length = 180
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 219 GMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRC 106
G+ S Y A + G V WD V RARRC
Sbjct: 42 GVASSYYAPFAAAGAGAAIAAVAGVVAWDAVGHRARRC 79
>04_03_0589 -
17604361-17604800,17604887-17604949,17605025-17605280,
17605373-17605634,17605739-17605885,17606118-17606236,
17606373-17606531,17606911-17606947,17607023-17607174
Length = 544
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 135 DHVEARARRCSGGVSAGK 82
DHV A+ARR G SAG+
Sbjct: 525 DHVRAQARRTKRGRSAGQ 542
>03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405
Length = 410
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +2
Query: 71 RWW-RLPALTPPEHRLARAST 130
RWW RLP PP + R ST
Sbjct: 118 RWWARLPPRPPPREDMERWST 138
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 136 PGHAADVQTVPAPY-TITTAVSSVKAGH 216
P AADV VP P ++ T+V++V AGH
Sbjct: 50 PAPAADVY-VPTPVPSLPTSVAAVAAGH 76
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 138 WDHVEARARRCSGGVSAGKRHHRCNCYYVSEHHLF 34
WD + RR GG G+ R + EH LF
Sbjct: 81 WDDNDGNDRRGGGGKPRGEERRRGVPWSEDEHRLF 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,811,492
Number of Sequences: 37544
Number of extensions: 130252
Number of successful extensions: 383
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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