Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J12
         (219 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)              27   3.2  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            26   5.6  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)                  25   7.4  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   25   7.4  

>SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)
          Length = 568

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 114 RRCSGGVSAGKRHHRCNCYYVSEHHLF 34
           R+ SG  +AG +H    C+ V + HLF
Sbjct: 455 RKHSGMFAAGMQHDSQECFAVLQEHLF 481


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 159 LNISSVPWDHVEARARRCSGGVSA 88
           +N+S +P  H   RA  C GG++A
Sbjct: 381 INVSEIPLTHKCPRAESCLGGLNA 404


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 138 WDHVEARARRCSGGVSAGKRH 76
           W +    +R C GGVS+ +RH
Sbjct: 481 WSNWSECSRSCGGGVSSSERH 501


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 135  DHVEARARRCSGGVSAGKRHHRCNCY 58
            D V ARAR   G +  G +H    CY
Sbjct: 1573 DDVIARARDLDGTLFTGSKHDASKCY 1598


>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
          Length = 346

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPY 177
           P G  P  C  + PG+  DV  +PA Y
Sbjct: 274 PPGYGPDVCI-IPPGYGPDVYIIPADY 299


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGH 216
           P   PP   +  +P   A +Q VP P T    V   +A H
Sbjct: 619 PRLPPPGPPYQRVPPPGAPIQRVPLPETHHQRVPYSRATH 658


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 132 HVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
           H+    RR S       RHH C+   +S+HH
Sbjct: 454 HLHYHRRRLSIHHHPSSRHHHCHRPRLSKHH 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,052,145
Number of Sequences: 59808
Number of extensions: 129409
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 16,821,457
effective HSP length: 50
effective length of database: 13,831,057
effective search space used: 304283254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)