Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J12
         (219 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF497797-1|AAM46869.1|   58|Homo sapiens Alu superfamily-like pr...    29   3.6  
AK126716-1|BAC86656.1|  250|Homo sapiens protein ( Homo sapiens ...    28   4.7  

>AF497797-1|AAM46869.1|   58|Homo sapiens Alu superfamily-like
           protein protein.
          Length = 58

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 177 VRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYV 52
           V+ W  L +SS PW H  + A       + G  HH    +Y+
Sbjct: 18  VQSW--LTVSSAPWVHASSPASASRVAGTTGAHHHTWLIFYI 57


>AK126716-1|BAC86656.1|  250|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44762 fis, clone BRACE3031743, moderately
           similar to Homo sapiens bruno-like 4, RNA binding
           protein. ).
          Length = 250

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 150 SSVPW---DHVEARARRCSGGVSAGKRHHR 70
           +S PW   D   ++A R +GGV AG+RH +
Sbjct: 155 TSFPWASADAASSKAPRGAGGVGAGQRHRQ 184


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,743,272
Number of Sequences: 237096
Number of extensions: 643122
Number of successful extensions: 1415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)