Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J12
         (219 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036702-7|AAB88372.1|  360|Caenorhabditis elegans Hypothetical ...    28   0.78 
AF016685-10|AAG24143.2|  195|Caenorhabditis elegans Hypothetical...    27   1.8  
Z93381-4|CAB07607.2|  382|Caenorhabditis elegans Hypothetical pr...    25   9.6  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    25   9.6  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AF036702-7|AAB88372.1|  360|Caenorhabditis elegans Hypothetical
           protein F33D4.4 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 102 GGVSAGKRHHRCNCYYVSEHHLFYKFQ 22
           GG+  G   H C  ++VSEH++F K Q
Sbjct: 215 GGLVLGMGLHPCAGHFVSEHYVFKKDQ 241


>AF016685-10|AAG24143.2|  195|Caenorhabditis elegans Hypothetical
           protein F59E11.7a protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 12  DDLPEIYRKDDVHLRSSSCIG 74
           DD+   Y K+  +LRSS CIG
Sbjct: 170 DDMTRRYEKEAANLRSSICIG 190


>Z93381-4|CAB07607.2|  382|Caenorhabditis elegans Hypothetical
           protein F28G4.4 protein.
          Length = 382

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 177 HHHYSCQLGKSW 212
           HHHY CQ    W
Sbjct: 262 HHHYKCQFLPQW 273


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAP 174
           P  APP A +   P    D  T PAP
Sbjct: 887 PLQAPPQAPYGYDPSRYQDPSTYPAP 912


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAP 174
           P  APP A +   P    D  T PAP
Sbjct: 907 PLQAPPQAPYGYDPSRYQDPSTYPAP 932


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,074,604
Number of Sequences: 27780
Number of extensions: 89389
Number of successful extensions: 220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)