Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J12
         (219 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52550.1 68418.m06525 expressed protein                             30   0.18 
At4g04650.1 68417.m00680 hypothetical protein                          26   3.0  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    26   3.0  
At5g01130.1 68418.m00017 hypothetical protein contains Pfam prof...    25   5.2  
At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger) fa...    25   6.8  
At1g43730.1 68414.m05028 hypothetical protein                          25   6.8  
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    25   9.0  

>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
           + C D  R          PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


>At4g04650.1 68417.m00680 hypothetical protein 
          Length = 332

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 144 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHHLFYKFQ 22
           V W+ +  R R  + G+S       CN +  S  HLF++ Q
Sbjct: 149 VAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQ 189


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -1

Query: 192 SCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYV 52
           S +   + W CL  SS  W  ++ R  +    ++A       N +Y+
Sbjct: 69  SLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYL 115


>At5g01130.1 68418.m00017 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 484

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 156 SDSTSALHHHYSCQ 197
           S S SA+HH Y+CQ
Sbjct: 319 STSKSAIHHFYTCQ 332


>At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger)
           family protein (ATL3) identical to RING-H2 zinc finger
           protein (ATL3) GB:AF132013 (Arabidopsis thaliana)
          Length = 324

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 207 FYRADSCSDGVRRWYCLN 154
           F+R DSC DG+    CL+
Sbjct: 115 FFRQDSCKDGLECSICLS 132


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 144 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHHLFYK 28
           V W+ +  R R  S G+S       CN +  S  HLF++
Sbjct: 171 VAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFE 209


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 153 CSDS-TSALHHHYSCQLGK 206
           C D+ TS  H+H  CQ+GK
Sbjct: 525 CIDTVTSVWHYHGGCQVGK 543


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,870,388
Number of Sequences: 28952
Number of extensions: 84555
Number of successful extensions: 222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 52
effective length of database: 10,565,056
effective search space used: 211301120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)