Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J11
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   1.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    23   4.1  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    23   5.4  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 93  PSPSAYLLTSRNLVLVVT 146
           PSP   +LT +NL LV+T
Sbjct: 834 PSPRQLVLTKKNLYLVIT 851


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 56  VAHADIDKFLGRAVSIGISPNITE 127
           V +AD++  L RA+ I    N+TE
Sbjct: 85  VEYADVEAILNRALIIAEQHNLTE 108


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 113 EICRWRRPYLEIYRYQHEQQLKAPRL 36
           EI  WR  + +++ +  EQ  K P +
Sbjct: 336 EIILWRNLFRKVFLFTFEQSQKTPHV 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,890
Number of Sequences: 5004
Number of extensions: 8140
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)