Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J11
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0350 - 7734494-7734952,7735765-7736133                           26   4.7  
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897     25   6.3  
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582...    25   8.3  

>03_02_0350 - 7734494-7734952,7735765-7736133
          Length = 275

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 162 LVTVNQSQPVPSSVMLGDMPMETALPRNLSISA 64
           L+      P+P+   + D+P  T++P  + +SA
Sbjct: 149 LMPAPPQMPMPAPFSISDLPSSTSVPTTVDLSA 181


>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
          Length = 553

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 GISPNITELGTGCDWFTV 157
           G+ PN+T  G GC + TV
Sbjct: 225 GLPPNVTVCGAGCHYKTV 242


>07_03_0369 -
           17356806-17356934,17357145-17357278,17357989-17358247,
           17358322-17358410,17358644-17358794,17358889-17359032,
           17359358-17359477,17359595-17359769,17359842-17360215
          Length = 524

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 144 SQPVPSSVMLGDMPMETALPRNLSISA*ATTKS 46
           + P PSS   GD+P  T + R + +++ AT KS
Sbjct: 69  ASPSPSSRGDGDVPAGTLVERPIHLASMATGKS 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,032,220
Number of Sequences: 37544
Number of extensions: 54718
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)