Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J11
         (163 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27152| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_50633| Best HMM Match : ShTK (HMM E-Value=0.78)                     25   7.2  
SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_27152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -2

Query: 162 LVTVNQSQPVPSSVMLGDMPM----ETALPRNLSIS 67
           L TV ++ PVP+++++GD  +    E  L R+L +S
Sbjct: 53  LTTVRENNPVPNALIIGDSMIKGINENRLSRSLIVS 88


>SB_50633| Best HMM Match : ShTK (HMM E-Value=0.78)
          Length = 93

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 119 C*EICRWRRPYLEIYRYQH 63
           C +I RW +PY+++++  H
Sbjct: 23  CKDISRWCKPYIKLWKRYH 41


>SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 162 LVTVNQSQPVPSSVMLGDMPMETALPRNLSIS 67
           L TV ++ PVP ++++GD  ++      LS S
Sbjct: 228 LTTVRENNPVPKALIIGDSMIKGINENRLSQS 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,567,262
Number of Sequences: 59808
Number of extensions: 61330
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 16,821,457
effective HSP length: 33
effective length of database: 14,847,793
effective search space used: 296955860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)