Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J11
         (163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z73424-5|CAA97782.3|  506|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF125971-8|AAP86614.1|   92|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    25   7.2  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    25   7.2  

>Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical
           protein F47G4.4 protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 144 SQPVPSSVMLGDMPME----TALPRNLSISA*ATTKSAEIITNFNI 19
           S+P+PS+  L ++P+E    +   R +  +  A  K A+IIT   +
Sbjct: 41  SEPLPSTSTLSELPIECLRLSTDERTIGAATNAILKVADIITGHEV 86


>Z73424-5|CAA97782.3|  506|Caenorhabditis elegans Hypothetical
           protein C44B9.5 protein.
          Length = 506

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 153 VNQSQPVPSSVMLGDMPMETALPRNLSISA*ATTKSAEII 34
           ++ + P  SS +   MP+ T  P+NL+      T SA  I
Sbjct: 265 ISSTPPDKSSFLAETMPLATPSPKNLTPKRALPTSSARSI 304


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 98  RRPYLEIYRYQHEQQLKAPRLLQTSTFL 15
           R+ YL      H++ LKAPR+   + F+
Sbjct: 239 RKEYLHRMTVNHQKGLKAPRIFVQARFI 266


>AF125971-8|AAP86614.1|   92|Caenorhabditis elegans Hypothetical
           protein Y4C6B.7 protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 156 TVNQSQPVPSSVMLGDMPMETALPR 82
           T ++S+ VPS+  LGD+ M TA  R
Sbjct: 42  TSSKSKAVPSAPKLGDVIMPTAATR 66


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 20  MLKFVIISALLVVAHADIDKFLGR 91
           M++F IISA+ +V+ + +  F+G+
Sbjct: 537 MIRFAIISAIFLVSFSQVFYFVGK 560


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 20  MLKFVIISALLVVAHADIDKFLGR 91
           M++F IISA+ +V+ + +  F+G+
Sbjct: 537 MIRFAIISAIFLVSFSQVFYFVGK 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,791
Number of Sequences: 27780
Number of extensions: 46883
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)