Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J11
         (163 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to...    27   1.3  
At1g55770.1 68414.m06385 invertase/pectin methylesterase inhibit...    26   2.9  
At4g03400.1 68417.m00462 auxin-responsive GH3 family protein sim...    26   3.9  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    25   9.0  

>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
           nitrate transporter (ntp2) [Arabidopsis thaliana]
           GI:4490321
          Length = 577

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 74  DKFLGRAVSIGISPNITELGTG 139
           D FLGR  +IGI   I  LGTG
Sbjct: 90  DSFLGRFKTIGIFSTIQALGTG 111


>At1g55770.1 68414.m06385 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|Q43111
           Pectinesterase 3 precursor (EC 3.1.1.11) (Pectin
           methylesterase 3) {Phaseolus vulgaris}, SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 175

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  ISALLVVAHADIDKFLGRAVS 100
           ISA+L  AH D+D +L  A+S
Sbjct: 114 ISAMLADAHTDVDVWLSAAIS 134


>At4g03400.1 68417.m00462 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 591

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 23  LKFVIISALLVVAHADIDKFLGRAVSIGISPNITE 127
           L+ +  S + +V+HAD+D ++ R      SP +T+
Sbjct: 60  LETLFTSLVPIVSHADLDPYIQRIADGETSPLLTQ 94


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 149 TSHNQYQVP*C*EICRWRRPYLEIYRYQHEQQLKAPRLLQTS 24
           T H+    P     C  RRP L      H +QL+ P +  T+
Sbjct: 31  TGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTT 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,626
Number of Sequences: 28952
Number of extensions: 42152
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,070,560
effective HSP length: 34
effective length of database: 11,086,192
effective search space used: 210637648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)